Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002057885.1_202017-03- 21] 17 sequences; 12,147,923 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 107 1e-18 seq9 102 6e-17 >seq12 Length=1054145 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 470309 ACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 470250 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 470249 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 470190 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 470189 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTA 470130 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 470129 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 470098 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || |||||||| |||||||| | || ||| ||| |||||| | ||| Sbjct 64692 GTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTG 64751 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| |||| | |||||| || || || | |||||||| || ||||| Sbjct 64752 TTTACCGGCAAAGATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 64811 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | ||| || | ||| ||||||| | || || | ||| || | || || || Sbjct 64812 TGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 64871 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||| || || ||||||||||| Sbjct 64872 CAGTGTCTTGACGAAAATTTGCAT 64895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| |||||| || ||||| ||||| ||||||||||| | || ||| || Sbjct 64906 AGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTA 64965 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | ||| || || ||| | || | ||| ||||||||| || | ||||| Sbjct 64966 CCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCT 65025 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| ||||| | ||| |||||| | || || | ||| Sbjct 65026 TTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTT 65085 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || || | ||||| || ||||||||||| Sbjct 65086 ATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 65123 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| |||||||| || || | || ||| ||| ||||||| ||| || || Sbjct 65155 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 65214 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | |||||||||||| || | |||||||| || ||||| ||| Sbjct 65215 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 65274 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || || | ||| || | || || |||| ||| Sbjct 65275 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 65334 Query 18309 TTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 65335 TTGACAAAAATTTGCAT 65351 >seq9 Length=449612 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | || ||| ||| ||||||||||| || || Sbjct 59697 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 59638 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | ||||||||| || || | |||||||| || ||| | | |||| Sbjct 59637 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 59578 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | |||||| | || || ||||| || Sbjct 59577 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 59518 Query 18309 TTTACAAAA 18317 || |||||| Sbjct 59517 TTGACAAAA 59509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665