Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002057885.1_202017-03- 21] 17 sequences; 12,147,923 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 118 5e-22 seq9 91.5 7e-14 >seq5 Length=589812 Score = 118 bits (130), Expect = 5e-22 Identities = 310/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| ||||||| ||| |||||| || || || ||| || | ||| |||| Sbjct 319417 TTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAA 319358 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 319357 TCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAA 319298 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||| ||||| | ||||||||||| | || | ||||| ||| Sbjct 319297 TATCAATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAG 319238 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | || || | ||||||||| | ||| | Sbjct 319237 GTCTTTTATTACCACCCTGGTCAACATAACGGGCGGTGTTATTGAAAACACGAATCATAG 319178 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | ||| |||||||| | | ||| | || || || || | ||| | Sbjct 319177 GAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGT 319118 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| || | | Sbjct 319117 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGG 319058 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 319057 TGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTT 318998 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | ||| || || || || | || |||||| ||||| Sbjct 318997 GAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATAT 318945 Score = 84.2 bits (92), Expect = 1e-11 Identities = 316/492 (64%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||| ||||| || || |||||| ||||||||| |||||||||||||| | Sbjct 320591 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 320532 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGG-CAA-- 24811 |||||||| | || ||| | ||| || || |||| || |||| ||| ||| Sbjct 320531 GTTAGTTTACCCATAGTTGGGGCACGTAAGAATAAATTCAAAGAATGAGATTGATCAATA 320472 Query 24812 ---ACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAA 24868 ||| |||| ||| || || | || |||||| || || || || || || Sbjct 320471 TAGACAGAACG------ATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAA 320418 Query 24869 GCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCA 24928 | || |||||| || || | || ||||| | ||| | ||||| || ||| Sbjct 320417 ACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAGCCTTGAATGGAGCCA 320358 Query 24929 TTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATC 24987 |||| | | | |||| | | ||||| | ||||| | ||| | |||| || Sbjct 320357 TTTTGTGTAATCAGATACTGTTTCATACCCTCATCCCAAATACCTAAATCAACCAAG-TC 320299 Query 24988 TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA 25047 | | |||| || | | ||||| || || || || | | | | Sbjct 320298 ACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACGGGAGTACAT 320239 Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 || ||||||| |||||| ||||||||||||| || || ||||| || || ||||| || Sbjct 320238 ATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGT 320179 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||||| ||| || | |||||||| | ||||| || | || |||| | |||| Sbjct 320178 AGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATCTTTTCTTAA 320119 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 320118 GGTGTCCCAATC 320107 >seq9 Length=449612 Score = 91.5 bits (100), Expect = 7e-14 Identities = 213/315 (68%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 |||||| || | |||||| ||||||||||||| || | ||||| ||||| || || || Sbjct 223703 GTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGT 223762 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| ||| || | || ||||| || |||| ||||||||| || | | |||| Sbjct 223763 TGGCATTGGTGCCATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAA 223822 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCG-ATATCGTTATCATATAAATCAAATTGTA 25226 | ||||| || | | | || | | || |||| || || ||| ||||||| Sbjct 223823 GGTTTCCCAGTCCCACAT----GCCAAATGGTTTAGCGTT-CCACAT--ATCGAATTGTA 223875 Query 25227 ACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCC 25285 | ||| | ||| | || || || |||||||| ||||||||||||| | || ||| Sbjct 223876 A-AATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCC 223934 Query 25286 ATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAA 25345 | || || || | | ||||| || ||| |||| || || |||||||| | Sbjct 223935 AATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGA 223994 Query 25346 AACTTAGCTTTTTCT 25360 | ||||| |||| Sbjct 223995 GTTTGAGCTTCTTCT 224009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039947573275