Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002057885.1_202017-03- 21] 17 sequences; 12,147,923 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11 152 9e-32 seq9 145 1e-29 seq12 143 5e-29 seq10 116 7e-21 >seq11 Length=690901 Score = 152 bits (168), Expect = 9e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || ||||||||||| | || || || || || Sbjct 635794 ATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 635853 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 635854 TCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 635913 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 635914 GGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGAT 635973 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||| | ||| ||||| |||||||| || || |||| ||| Sbjct 635974 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 636017 >seq9 Length=449612 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || ||||| || ||||| | ||||| ||| || || Sbjct 59733 ATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAG 59674 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 59673 TCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 59614 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 59613 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 59554 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| | ||| ||||| |||||||| || || || Sbjct 59553 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTT 59516 >seq12 Length=1054145 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || |||| ||||| || || || || Sbjct 470336 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTG 470277 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 470276 TAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 470217 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 470216 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAA 470157 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || ||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 470156 GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 470098 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || || || || | ||||| || || || || || || Sbjct 64894 ATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 64953 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||| |||||||||||||| ||||||||||| || || Sbjct 64954 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 65013 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| |||| || || ||||| || || ||||| Sbjct 65014 GGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 65073 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| | ||| || ||||| Sbjct 65074 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 65123 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 65122 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 65181 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| ||||| || ||||| ||||| || || Sbjct 65182 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 65241 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || || || ||||| || || ||||| Sbjct 65242 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCA 65301 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || ||||| || | ||| || | || || ||||| Sbjct 65302 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 65351 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | || || | |||||| || | ||| || ||| || ||||| Sbjct 65578 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 65637 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || ||||| ||||| || ||||| ||||| || || Sbjct 65638 GACAGCGTTCTGCCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 65697 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || || || || ||||| || ||||| Sbjct 65698 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 65757 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || || || || | ||| |||||||| Sbjct 65758 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 65807 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||||| || || || || || || Sbjct 65350 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 65409 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| || | || ||||| ||||| || || |||||||| || || Sbjct 65410 GACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 65469 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| || || ||| || || || || ||||| Sbjct 65470 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 65529 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| ||||||||||| || || || |||| || |||||||| Sbjct 65530 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 65579 >seq10 Length=753937 Score = 116 bits (128), Expect = 7e-21 Identities = 334/505 (66%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| | |||||||| ||||| || || || | || || || Sbjct 404202 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 404143 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AA 38950 | ||| ||||| || || |||| | || || ||||| | | || | | | | || Sbjct 404142 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT-TGTTACCGAAAGCGACCAA 404084 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | ||| ||||| || || ||||| ||||| |||||| ||| |||||||| | || Sbjct 404083 CAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAA 404024 Query 39011 TTTAAATGGTAATGCATCATCAATAAAT-TCttt-ttctatttctacagcttgtttaatt 39068 || |||||| || || ||| || | ||||| ||| ||||| ||||| | | | Sbjct 404023 AGCAACTGGTAAGGCGTC--CAAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACA 403966 Query 39069 atcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAAC 39126 || | || | || | | | ||| | || | ||| || | | || | Sbjct 403965 ATTTT--TTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGG---GCGAACAACAAGC 403911 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||||| || || || ||||||||||| ||| | || ||||| || ||| ||||| | Sbjct 403910 ATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAAC 403851 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| | ||||||||||| | ||| || || || ||||| || || || || | Sbjct 403850 CGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGA 403791 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 ||| || | | ||||| || | || |||| | ||||||| | | | ||| || Sbjct 403790 CACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGAA 403731 Query 39307 TCCAATTTATGGCCCAATCTGCTTT 39331 |||| ||| ||||| || || || Sbjct 403730 TCCATCTTAAAGCCCATTCGGCCTT 403706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135807658600