Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002057885.1_202017-03- 21] 17 sequences; 12,147,923 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 199 8e-46 seq12 197 3e-45 seq11 176 9e-39 >seq9 Length=449612 Score = 199 bits (220), Expect = 8e-46 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||||| ||| |||||||| || || || || |||| Sbjct 59729 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 59670 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 59669 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 59610 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || ||||| ||||| || ||| || ||| | Sbjct 59609 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 59550 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| ||||| Sbjct 59549 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 59510 >seq12 Length=1054145 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 65123 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 65182 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || |||||||| | ||||||||||||||||| Sbjct 65183 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAG 65242 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || | || || || ||||| || ||| || ||| | Sbjct 65243 GAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 65302 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 65303 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 65351 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 64661 ATCAGTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGT 64720 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| |||||||||||||| || |||||||| | |||||| || | Sbjct 64721 AGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGT 64780 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 ||||||| || |||||||| |||||||| |||| || || || ||||| || ||| || Sbjct 64781 CTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTAACGTTGTCAATAGTGTCAGAAG 64840 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 64841 ATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 64895 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 470328 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 470269 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| || || || Sbjct 470268 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 470209 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 470208 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 470149 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 470148 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 470101 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||| ||||||||||| || || || Sbjct 65611 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTGCCGTCTTCTAGCTGCTTACCG 65670 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 65671 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 65730 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || ||||| || ||| |||||||| ||||| || || || ||||| ||| Sbjct 65731 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 65790 Query 82794 TTTACAAATATCTGCATTAT 82813 || || || |||||||| || Sbjct 65791 TTGACGAAAATCTGCATAAT 65810 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 65351 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 65410 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||||||||||||||| || || || |||||||| | || ||||||||||||| Sbjct 65411 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 65470 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 65471 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 65530 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 65531 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 65579 Score = 159 bits (176), Expect = 7e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 64895 TACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 64954 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||||||||| || |||||||| || | ||| |||||||| |||| Sbjct 64955 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 65014 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||||||| ||| ||||| || || ||||| || || || ||| Sbjct 65015 GGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 65073 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| ||||| ||||| | || || || || || ||||| Sbjct 65074 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 65123 >seq11 Length=690901 Score = 176 bits (194), Expect = 9e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || | ||| ||||| || || || || || |||| Sbjct 635798 TACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 635857 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 635858 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 635917 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| | Sbjct 635918 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 635977 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| || || Sbjct 635978 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 636017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826986145763