Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002058645.1_202017-03- 21] 17 sequences; 11,964,015 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 259 6e-64 seq9 122 1e-22 >seq5 Length=575802 Score = 259 bits (286), Expect = 6e-64 Identities = 869/1339 (65%), Gaps = 38/1339 (3%) Strand=Plus/Plus Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACG 104324 ||| || || ||| || || || || || |||||| | || ||| || | ||||| Sbjct 293235 AGATATCGAGGCTGCTTTAGAAACGTATAACTTGATGTCTCTAAAATATTTT-ACTCACG 293293 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTA 104384 | | ||||| | |||||||| ||||| |||| ||| ||||||||| ||| ||| | Sbjct 293294 CCTCTCCAACGTTGTTCAATGCCGGTACTCCAAAACCTCAAATGTCCTCTTGTTTCTTGG 293353 Query 104385 TCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAA 104444 | |||| ||||||||||| ||| | || || || | || | | ||| ||||| | Sbjct 293354 TTGCCATGAAGGAGGACTCTATCGAGGGGATTTACGACACCTTGAAGGAATGTGCTTTGA 293413 Query 104445 TCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTC 104504 | || || ||||| |||||||| | || |||||| | | | | | | ||| Sbjct 293414 TTTCCAAAACTGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTT 293473 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||| || ||||| ||| || | ||| | ||||| ||| |||| || || || Sbjct 293474 ACATTGCTGGTACAAACGGTACTTCTAACGGTTTAATTCCTATGATTCGTGTTTTCAATA 293533 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTAT 104620 ||| || || ||||| | || | ||| | |||| || | | || | || Sbjct 293534 ACACCGCCCGTTATGTTGACCAGGGTGGTAAT-AAAAGACCTGGTGCGTTTGCCCTTTAC 293592 Query 104621 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAC 104680 || || |||||||| || |||||| | || || |||| | | ||||| ||| | Sbjct 293593 CTGGAACCATGGCATGCTGATATCTTTGATTTTATTGATATTAGGAAGAACCACGGTAAA 293652 Query 104681 GAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAA 104739 ||||| | |||| | ||| | ||| | ||||| |||||||| ||||| |||||||| Sbjct 293653 GAGGAAATTC-GTGCAAGAGATTTGTTCCCTGCTCTATGGATTCCTGATCTTTTCATGAA 293711 Query 104740 GAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACA-AGGCACCTGGTCTCT 104798 | | || || || | ||| | ||| | | || | |||| ||| || |||||| | Sbjct 293712 GCGTGTCGAAGAAAATGGGACCTGGACATTATTCTCTCCA-ACATCAGCTCCTGGTTTAA 293770 Query 104799 CCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG 104858 |||| ||||| |||||||| || || || || |||||| |||||||||| | Sbjct 293771 GCGATTGTTACGGTGACGAGTTTGAGGCTCTATATACCCGCTACGAGAAAGAAGGTCGTG 293830 Query 104859 CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 104918 | ||| | ||| | | ||| | | ||| | | ||||||| || | Sbjct 293831 ---GTAAGACTATCAAAGCCCAAAAATTATGGTATTCCATTTTGGAAGCTCAAACTGAAA 293887 Query 104919 CTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 104978 |||||||||| | | | ||||||| || || |||||| ||| ||||||||| || | Sbjct 293888 CTGGTACACCTTTCGTTGTTTACAAGGATGCTTGTAACAGAAAATCTAATCAAAAAAACT 293947 Query 104979 TGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 | ||||| |||||| || || | || ||||| | |||| ||| ||||| Sbjct 293948 TAGGTGTCATCAAGTCATCAAACTTATGCTGTGAAATTGTTGAATACTCAGCTCCAGATG 294007 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC------------CAAGTATGTGG 105086 | || ||||| |||||| | || || | || | || | | || || Sbjct 294008 AAACTGCTGTTTGTAACTTGGCTTCCGTTGCCTTACCAGCATTCATTGAAACTTCTGAGG 294067 Query 105087 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCA 105146 || |||| |||| | | ||||| | || ||| || | ||| |||||| Sbjct 294068 ATGGTAAGACTTCCACATACAACTTCAAAAAATTACATGAAATTGCTAAAGTTGTCACTC 294127 Query 105147 AAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTA 105206 || |||||||||| |||||| | |||| ||||| ||||| || | ||||| | Sbjct 294128 GTAATTTAAACAGAGTCATTGATCGTAATTACTACCCTGTTGAAGAAGCGAGAAAATCCA 294187 Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTT 105266 |||||||||| | ||||||| | | |||||||| |||||||| || ||||| || | Sbjct 294188 ATATGAGACATAGACCAATTGCTTTGGGTGTTCAAGGTCTCGCTGACACTTTCATGCTGT 294247 Query 105267 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCA 105326 || |||||||||| || ||||| | ||| | || ||||| || | Sbjct 294248 TACGTTTGCCATTTGATTCTGAGGAAGCCCGTTTGCTAAATATCCAAATCTTTGAAACTA 294307 Query 105327 TGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAA 105386 | ||||| ||| | | || || || || | || || || |||||||| |||| Sbjct 294308 TTTATCATGCCTCCATGGAAGCTTCTTGTGAACTAGCTCAGAAGGACGGTCCATACGAAA 294367 Query 105387 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA 105446 | || | || ||||| ||||| ||||| | || || ||||||||||||| | | | Sbjct 294368 CTTTCCAAGGATCTCCTGCTTCTCAAGGTATACTACAGTTTGATATGTGGG-ACCAAAAA 294426 Query 105447 CCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGGAACG-CATCAAGGAGAAGGGTCTTCG 105504 || | || | || ||||| | || ||| || | |||| | || | ||| || | Sbjct 294427 CCCTACGGCATGTGGGATTGGGACAC-CTTAAGAAAAGATATCATGAAGCATGGTATTAG 294485 Query 105505 TAACAGTCTCCT----CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 105560 || |||| |||||| |||||||| || || ||||| | ||||| |||||| Sbjct 294486 AAA----TTCCTTGACCATGGCACCAATGCCTACTGCATCCACATCCCAAATATTGGGTT 294541 Query 105561 ATAATGAATGCTTTGAACC 105579 |||||||||| || ||||| Sbjct 294542 ATAATGAATGTTTCGAACC 294560 >seq9 Length=431184 Score = 122 bits (134), Expect = 1e-22 Identities = 872/1377 (63%), Gaps = 56/1377 (4%) Strand=Plus/Minus Query 104237 ATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 104296 ||||| ||||| | ||||| ||||| || || || ||||| || |||| || | Sbjct 227420 ATGCGTGTGGCGCTAGGTATCCATGGTAGCGATATCGAATCTGTGCTGAAGACTTATAAT 227361 Query 104297 AAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 104355 |||||| ||| || |||| |||||| | ||||| | ||||| ||||||||||| Sbjct 227360 TTGATGTCGTTAAGATAC-TTCACTCACGCTTCCCCAACTTTATTCAACGCTGGTACACC 227302 Query 104356 AAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTAT 104415 | || |||||||| || ||| | || |||| ||||| ||||| ||| | ||||| Sbjct 227301 ACATCCTCAAATGTCTTCATGTTTCTTAATTGCCATGAAGGATGACTCTATCGAAGGTAT 227242 Query 104416 CTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCA 104475 |||| ||| | | || ||||| || || || || || ||| |||| | || Sbjct 227241 TTATGATACTTTGAAAGAATGTGCTATGATTTCCAAAACTGCAGGTGGTGTTGGTCTTCA 227182 Query 104476 CATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGG 104535 ||| | | | | ||| ||| ||| || || || ||| ||| | || Sbjct 227181 TATCAACAACATCCGTTCCACAGGTTCTTATATCGCTGGTACCAACGGTACTTCAAACGG 227122 Query 104536 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG 104595 | ||||| ||| |||| || || || || || || ||||| | || | || | Sbjct 227121 GTTGATTCCTATGATTCGTGTTTTCAATAATACTGCCCGTTATGTGGACCAGGGTG---G 227065 Query 104596 TCGAAAGGGATCTATCGCAGTC-----TATCTT-GAGCCATGGCACGCGGATATCATGGA 104649 | ||| || || || || | |||| ||||||||||| || |||||| | || Sbjct 227064 TAACAAGAGACCTGGTGCCTTCGCCCTTTTCTTGGAGCCATGGCATGCAGATATCTTCGA 227005 Query 104650 GTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCT 104708 || | || | | | || ||| | || || | |||| | ||| | ||| Sbjct 227004 CTTTGTCGATATCAGAAAAACACATGGTAAGGAAGAAATTC-GTGCAAGAGATTTGTTCC 226946 Query 104709 CCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTC 104768 | ||||| ||||| || ||||| |||||||| | ||| | ||| ||| |||| || Sbjct 226945 CTGCTCTATGGATCCCTGATCTTTTCATGAAACGTGTTCAAGAGGATGGGCCTTGGACTT 226886 Query 104769 TCTTTT-GTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCC 104827 | |||| | |||| || || ||| | |||| |||||| || ||||||| Sbjct 226885 TATTTTCGCCCAG-TGCTGCCCCAGGTTTAGATGATGTGTGGGGTGATGAATTTGAAGAA 226827 Query 104828 CTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTG 104887 || || || ||||| ||||||||| | | || | ||| | || Sbjct 226826 CTATATACTCGTTACGAAAGAGAAGGTCGTG---GTAAAACAATTAAAGCCCAAAAGTTG 226770 Query 104888 TGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGA 104946 ||| | || ||| | |||| | || || || || |||||||| | |||| |||| || || Sbjct 226769 TGGTATGCCATTTTGCAAG-CACAGACAGAAACAGGTACACCTTTCATGGTTTATAAGGA 226711 Query 104947 CGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTG 105006 ||| |||||| |||| || ||| |||| || ||| ||||| || || | || Sbjct 226710 CGCATGTAACAGGAAGACAAACCAACAGAACTTAGGTACTATCAAATCATCTAACTTATG 226651 Query 105007 TACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAAT 105066 | |||||| | |||| | | | ||||| || || || ||||| | || || || Sbjct 226650 TTGTGAAATCGTCGAATATTCCTCCCCGGATGAAACTGCAGTTTGTAATTTAGCTTCTAT 226591 Query 105067 CGCTCTCCC--CA--AGTATGTGGATCCAGA----GACAAA-----GACATTTGATTATG 105113 || || || || || || || | |||| | ||| | | | ||| | Sbjct 226590 TGCCCTACCAGCATTCGT-TGAGGTTTCAGAAGATGGTAAAACTGCAAGCTATAATTTCG 226532 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 | | | | ||||| || | ||| | ||| | ||| | ||||||||||| || | | Sbjct 226531 AGAGATTACACGAGATTGCTAAAGTCATTACCCACAACTTGAACAGAGTTATCGACCGTA 226472 Query 105174 ATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 ||| || || ||| ||| ||| | || || ||||||| || | || |||| || Sbjct 226471 ATTACTATCCAGTTCCCGAG---GCTAGAAATTCAAATATGAAGCATAGACCTATTGCTC 226415 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 105290 | ||||| |||||| | || ||| | || | | || | | ||||| || || | Sbjct 226414 TTGGTGTCCAGGGTTTGGCCGATACTTATATGATGTTGCGTCTACCCTTTGAATCGGAAG 226355 Query 105291 AAGCGAAGGAAATC--AATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 |||| | || || || | || || || || || || || || ||||||| || Sbjct 226354 AAGCTCA--AACTCTAAACAAACAAATCTTCGAAACTATTTACCATGCTACTCTTGAAGC 226297 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 | || ||||| | || ||| |||| || ||||| |||||||||||||| Sbjct 226296 CTCCTGTGAATTGGCCCAAAAAGAAGGTAAATATTCTACTTTTGAAGGTTCTCCAGCTTC 226237 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA-CTACGACTGG 105466 |||||| | | ||||| ||||||| |||| | | |||| || | || ||| Sbjct 226236 -CAAGGGTATTTTACAATTCGATATGT-GGAACGCTAAACCATTTGGCATGTGGGATTGG 226179 Query 105467 GAAGCTCTCAAGGAACG-CA---TCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||| | || ||| || | || | || | | |||| | | ||| | | ||||| Sbjct 226178 GAAAC-CTTAAGAAAGGACATTGTTAA--ACATGGGT-TAAGAAACTCTTTGACTATGGC 226123 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 ||||||||||| ||||| || | ||||| | ||| |||||||||| || ||||| Sbjct 226122 ACCAATGCCAACCGCCTCAACTTCCCAAATTCTTGGTTATAATGAATGTTTCGAACC 226066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080