Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F002079025.1_202017-03- 21] 17 sequences; 12,039,134 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9 199 8e-46 seq12 197 3e-45 seq11 176 9e-39 >seq9 Length=443501 Score = 199 bits (220), Expect = 8e-46 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||||| ||| |||||||| || || || || |||| Sbjct 63225 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 63166 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 63165 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 63106 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || ||||| ||||| || ||| || ||| | Sbjct 63105 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 63046 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| ||||| Sbjct 63045 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 63006 >seq12 Length=1035507 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 55420 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 55479 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || |||||||| | ||||||||||||||||| Sbjct 55480 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAG 55539 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || | || || || ||||| || ||| || ||| | Sbjct 55540 GAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 55599 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 55600 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 55648 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 463613 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 463554 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| || || || Sbjct 463553 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 463494 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 463493 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 463434 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 463433 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 463386 Score = 167 bits (184), Expect = 5e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 54958 ATCAGTTACCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGAATATTGT 55017 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| |||||||||||||| || |||||||| | |||||| || | Sbjct 55018 AGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGT 55077 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 ||||||| || |||||||| |||||||| || | || || || ||||| || ||| || Sbjct 55078 CTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAG 55137 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 55138 ATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 55192 Score = 167 bits (184), Expect = 5e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||| ||||||||||| || || || Sbjct 55908 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTGCCGTCTTCTAGCTGCTTACCG 55967 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 55968 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 56027 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || ||||| || ||| |||||||| ||||| || || || ||||| ||| Sbjct 56028 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 56087 Query 82794 TTTACAAATATCTGCATTAT 82813 || || || |||||||| || Sbjct 56088 TTGACGAAAATCTGCATAAT 56107 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 55648 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 55707 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||||||||||||||| || || || |||||||| | || ||||||||||||| Sbjct 55708 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 55767 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || | || || || || ||||| || | ||| | Sbjct 55768 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 55827 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || ||||| ||||| ||||| |||||||| Sbjct 55828 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 55876 Score = 159 bits (176), Expect = 7e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || | ||| ||||||||||| || || || || || |||| Sbjct 55192 TACCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 55251 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||||||||| || |||||||| || | ||| |||||||| |||| Sbjct 55252 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 55311 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || ||||| ||||||||||| ||| ||||| || || ||||| || || || ||| Sbjct 55312 GGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 55370 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| ||||| ||||| | || || || || || ||||| Sbjct 55371 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 55420 >seq11 Length=695907 Score = 176 bits (194), Expect = 9e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || | ||| ||||| || || || || || |||| Sbjct 643289 TACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 643348 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 643349 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 643408 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| | Sbjct 643409 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 643468 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| || || Sbjct 643469 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 643508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826986145763