Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099195.1_202017-02- 08] 2,159 sequences; 11,597,758 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2088 140 2e-28 seq1169 140 2e-28 seq974 140 2e-28 seq1109 125 5e-24 seq1486 122 6e-23 seq511 122 6e-23 seq1335 105 4e-18 seq873 105 4e-18 seq1663 98.7 7e-16 seq1624 98.7 7e-16 seq1420 98.7 7e-16 seq1356 98.7 7e-16 seq1260 98.7 7e-16 seq426 98.7 7e-16 seq1653 93.3 3e-14 seq1992 89.7 3e-13 seq1107 89.7 3e-13 seq1505 86.0 4e-12 seq652 82.4 5e-11 >seq2088 Length=103 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 4 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGGGGGAATCTCGT 63 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 64 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 98 >seq1169 Length=103 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGCAGTGGGAATCTCGT 67 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 68 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 102 >seq974 Length=103 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 98 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACCGTGGGAATCTCGT 39 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 38 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4 >seq1109 Length=26950 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 26744 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 26685 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 26684 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 26629 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 26628 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 26569 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 26568 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 26516 >seq1486 Length=103 Score = 122 bits (134), Expect = 6e-23 Identities = 79/87 (91%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 25910 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTT 25964 |||||||||||||||||||||||||||||||||||| || ||||||| |||||| | Sbjct 1 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGGTAATCCAT 60 Query 25965 TCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||||||| Sbjct 61 TCATGCGCGTCACTAATTAGATGACGA 87 >seq511 Length=103 Score = 122 bits (134), Expect = 6e-23 Identities = 79/87 (91%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 87 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGATAGGGACAGTGGGAATCTCGT 28 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 |||||| |||||||||||||||||||| Sbjct 27 TAATCCATTCATGCGCGTCACTAATTA 1 >seq1335 Length=22625 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 13936 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 13995 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 13996 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 14055 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 14056 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 14115 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 14116 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 14166 >seq873 Length=23011 Score = 105 bits (116), Expect = 4e-18 Identities = 168/239 (70%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| |||||||| ||||| | ||| || | ||||||||| ||||||||||||||||| Sbjct 22615 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 22674 Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198 | || |||| |||| | || |||| ||| || |||||||| || | | ||| Sbjct 22675 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 22730 Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 || || | || | ||||| ||||| |||||| ||| || || | | ||| || Sbjct 22731 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 22790 Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||| |||| || ||||| ||||| |||| || || || || || ||||| Sbjct 22791 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 22849 >seq1663 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 66/74 (89%), Gaps = 5/74 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 30 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 89 Query 25957 TAATCCTTTCATGC 25970 |||||| ||||||| Sbjct 90 TAATCCATTCATGC 103 >seq1624 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| || ||||||||||||||||||| | Sbjct 14 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTCCTTGTTCGCTATCGGTCTCTC 73 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 74 GCCAATATTTAGCTTTA 90 >seq1420 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||| || |||| |||||||||||||||||||||| | Sbjct 79 CTCTCTTTTCAAAGTTCTTTTCATCTTCCCATCACTGTACTTGTTCGCTATCGGTCTCTC 20 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 19 GCCAATATTTAGCTTTA 3 >seq1356 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| || | |||||||||||||||||||||| | Sbjct 85 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCCCTGTACTTGTTCGCTATCGGTCTCTC 26 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 25 GCCAATATTTAGCTTTA 9 >seq1260 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| || | |||||||||||||||||||||| | Sbjct 85 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCTCTGTACTTGTTCGCTATCGGTCTCTC 26 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 25 GCCAATATTTAGCTTTA 9 >seq426 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| || ||||||||||||||||||| | Sbjct 14 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTTCTTGTTCGCTATCGGTCTCTC 73 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 74 GCCAATATTTAGCTTTA 90 >seq1653 Length=103 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||| |||||||||||||||| |||||| |||| |||||||||||||||||| ||| || Sbjct 1 TCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGCCTCTCGCC 60 Query 20010 AATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 61 AATATTTAGCTTTA 74 >seq1992 Length=103 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/69 (88%), Gaps = 5/69 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 35 AAGCCCGTTCCCTTGGCGGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 94 Query 25957 TAATCCTTT 25965 |||||| || Sbjct 95 TAATCCATT 103 >seq1107 Length=103 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/69 (88%), Gaps = 5/69 (7%) Strand=Plus/Plus Query 25928 GCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATT 25982 |||||||||||||||||| || |||||||||||||| |||||||||| |||||||| Sbjct 1 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGGCACTAATT 60 Query 25983 AGATGACGA 25991 ||||||||| Sbjct 61 AGATGACGA 69 >seq1505 Length=103 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 5/67 (7%) Strand=Plus/Minus Query 25930 TAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||||||||| || |||||||||||||| |||||||||||| |||||||| Sbjct 103 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCCCTAATTAG 44 Query 25985 ATGACGA 25991 ||||||| Sbjct 43 ATGACGA 37 >seq652 Length=220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | |||||||||||| | || ||| || ||||| || ||||||| Sbjct 194 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 135 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| || | ||| || |||||||| || | | ||||||||| Sbjct 134 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCT 79 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTT 38233 | || | ||||| ||||| |||||| Sbjct 78 GGAGGAATACCTTCCTTGTCTTGAATTTT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938386597129