Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099225.1_202017-02- 08] 1,284 sequences; 11,561,149 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq421 145 2e-29 seq761 138 2e-27 seq319 120 6e-22 seq800 109 1e-18 seq673 89.7 1e-12 >seq421 Length=80267 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | || || || || | ||||| || || ||| || || ||| Sbjct 32363 ATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 32304 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| || | ||| ||||||||||| || |||||||||||||| || Sbjct 32303 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 32244 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| |||| || || |||| || || ||||| Sbjct 32243 GGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 32184 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || |||| ||||| | || || ||||| Sbjct 32183 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 32134 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || | ||||| || || ||| || || ||| Sbjct 31905 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 31846 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | || || | || ||||| |||||||| || ||||||||||| || Sbjct 31845 GACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 31786 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| || || ||| || | || || ||||| Sbjct 31785 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 31726 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| ||||||||||| || || || |||| ||| |||||||| Sbjct 31725 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 31676 Score = 120 bits (132), Expect = 6e-22 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | || || | |||||| || | ||| || || || |||||| Sbjct 31677 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 31618 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || || | || ||||| |||||||| ||||| |||||||| || Sbjct 31617 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 31558 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || || || || | ||| || ||||| Sbjct 31557 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 31498 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT--TTTATTAG 192544 ||||| | || ||||||||||| || || || || | || |||||||| | |||||| Sbjct 31497 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 31438 Score = 120 bits (132), Expect = 6e-22 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || ||||| || |||| |||||| || ||||||||| Sbjct 32135 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 32076 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || |||| ||| ||||| ||||| || ||||| |||||||| || Sbjct 32075 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 32016 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT--TATAGAATCTGACGATT 192484 || || ||||| || ||||| ||||| || || || || |||| || || |||| Sbjct 32015 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTT-GTCGNATAGTGTCAGAAGATT 31957 Query 192485 C-TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| || || || ||||| || | ||| || | ||| || ||||| Sbjct 31956 CANACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 31904 >seq761 Length=185191 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || |||| ||||| || || ||| || || || || Sbjct 8686 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 8627 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 8626 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8567 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || ||||| |||| || || ||||| || Sbjct 8566 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 8507 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||| || ||||| ||||| || || | || || ||||| || Sbjct 8506 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8456 >seq319 Length=101444 Score = 120 bits (132), Expect = 6e-22 Identities = 160/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || ||||||||||| | || || ||| | Sbjct 39771 GTTCAATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGT 39712 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||||| | ||||||| |||||||||||||| ||||| |||| Sbjct 39711 TGTAGTCAGATAG------------ANCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 39664 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| || ||||| || || || ||||| || | || | Sbjct 39663 GGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAG 39604 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 192523 | ||||| ||||| | ||| ||||| |||||||| || || |||| Sbjct 39603 AAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAA 39559 >seq800 Length=179045 Score = 109 bits (120), Expect = 1e-18 Identities = 161/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || ||||| || ||||| | ||||| || | Sbjct 134762 GTTCAATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGT 134821 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| | || |||||||| |||||||||||||| ||||| |||| Sbjct 134822 TGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 134881 Query 192419 GATCAGGTGGTATTCC-TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 | |||||||| || | ||||| |||| ||||| |||| || Sbjct 134882 GGTCAGGTGGGATACNAATCTTTGACTTG-------------ACATTGTCAATAGTGTCA 134928 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 || ||||| ||||| | ||| ||||| |||||||| || || || | ||| Sbjct 134929 GAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 134978 >seq673 Length=41353 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 || |||||||| || || || ||||| ||||| ||| | || ||||| || ||| ||| Sbjct 22820 AAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTT 22879 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || || ||||| | ||||||||||| | ||| || || || ||||| || || || Sbjct 22880 AAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAA 22939 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || | ||| || | | ||||| || | || |||| | ||||||| | | | ||| Sbjct 22940 AAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCT 22999 Query 50001 AATATCCAATTTATAGCCCAATCTGCTTT 50029 ||||| ||| |||||| || || || Sbjct 23000 TGAATCCATCTTAAAGCCCATTCGGCCTT 23028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984463804073400