Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099225.1_202017-02- 08] 1,284 sequences; 11,561,149 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq421 113 3e-20 >seq421 Length=80267 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 31448 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 31507 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 31508 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 31566 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || || || |||||| |||||| | | |||| Sbjct 31567 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 31622 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || |||||||| |||||| | || ||||| | |||| || Sbjct 31623 ACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 31674 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || | || || ||||| |||||| | || ||||| ||| | Sbjct 31676 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 31735 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | |||| | ||||| |||||| | || |||||||| Sbjct 31736 GACACGATCGATAACGTTAAGTCGAAAA-TCCAGGACAAGGAAGGTATCCCTCCAGATCA 31794 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || |||||||| || || || ||||||| | || || || ||||| Sbjct 31795 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 31854 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || || || ||| |||| || Sbjct 31855 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 31902 Score = 109 bits (120), Expect = 4e-19 Identities = 168/234 (72%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT-TGACTCCAC 23669 ||||| ||||| || || || || || || || || || || || || || ||| || | Sbjct 31904 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTNTGAATCTTC 31963 Query 23670 GGACACTGTT-GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| | || || |||| | |||| || ||||| |||||| | || |||||| Sbjct 31964 TGACACTATNCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGAT 32022 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGA 23783 ||||| | || || |||||||| || |||||||||||| |||||| | | || Sbjct 32023 CAACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCT----GA 32078 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || |||||||| || || ||||| || || || ||| |||| || Sbjct 32079 TTATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 32132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004310572272