Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099255.1_202017-02- 08] 570 sequences; 11,326,697 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq542 156 9e-33 seq209 145 2e-29 seq46 129 1e-24 seq188 89.7 1e-12 seq71 86.0 1e-11 >seq542 Length=31390 Score = 156 bits (172), Expect = 9e-33 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||||||||||||||||| |||| || | || || ||||| || || ||||||| Sbjct 6 TTCCTTTTGGATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCTAGCTGCTTACCGGCAA 64 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||| | ||||| || || ||||| |||||||| ||||| || | || ||| Sbjct 65 AGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGT 124 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 ||||||| ||||| || | ||| || || | |||||| || ||||| ||||||||||||| Sbjct 125 TATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAA 184 Query 283087 CGAATATCTGCAT 283099 | || |||||||| Sbjct 185 CAAAGATCTGCAT 197 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || || |||||||| ||| || || || |||||||| |||| Sbjct 198 ACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGA 257 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| | || || ||||| || || |||||||||||||| | |||||| || || Sbjct 258 CAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGG 317 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||||||||| || || | || ||| | ||||| || || |||| ||| || Sbjct 318 GATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAAC 377 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || || ||||| ||||||||||| ||||| |||||||| Sbjct 378 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 425 >seq209 Length=184469 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||| | | || | ||| | ||| || || ||||| Sbjct 8620 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCAN-----AATTGCTTACCAGCAAA 8566 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||||||| |||||||| ||||||||||||||||| | || || | Sbjct 8565 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 8506 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| |||| ||| ||||| || || || |||||||| || |||||||| || Sbjct 8505 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 8446 Query 283088 GAATATCTGCATTTT 283102 ||| || ||||| || Sbjct 8445 GAAAATTTGCATCTT 8431 >seq46 Length=350 Score = 129 bits (142), Expect = 1e-24 Identities = 148/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||||||||||||||||| |||| || | ||||| |||||||| || || |||| Sbjct 345 TTCCTTTTGGATGTTGTAGTCAGACAAG-GTTCTACCATCTTCTAGTTGCTTACCAGCAA 287 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACG 283025 | ||||| | ||||| || || ||||| || || ||||| || ||| ||||| ||| Sbjct 286 AAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAAT-TTTACTTTTGACG 228 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || |||||||| |||| ||| || || || || || ||||| || || | ||| || Sbjct 227 TTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTG 168 Query 283086 ACGAATATCTGCAT 283099 ||||| || ||||| Sbjct 167 ACGAAAATTTGCAT 154 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| ||||| ||||| || ||||| || |||| ||||| | || || || Sbjct 134 ACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCC 75 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 ||||| || |||||||| ||||| | |||||| || |||||||| ||||||||||| Sbjct 74 AGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGA 15 Query 283011 ATCTT 283015 || || Sbjct 14 ATTTT 10 >seq188 Length=44061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || |||||||| | ||||| | ||||| |||||||| || |||||||| Sbjct 116 TCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAA 57 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| | ||| ||||| |||||||| ||||||||||| || || Sbjct 56 ATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 10 >seq71 Length=188 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||||||| ||||||||||| || || | || ||| | || |||||||| |||| ||| Sbjct 182 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCA 123 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || |||||||| |||| ||||| || || || ||||| Sbjct 122 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731555532780