Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099265.1_202017-02- 08] 675 sequences; 11,390,279 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq629 113 3e-20 seq459 113 3e-20 seq296 100 2e-16 >seq629 Length=350 Score = 113 bits (124), Expect = 3e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGC 15037 ||||| || ||||| |||||||| || || || |||| | ||||||| ||| || | Sbjct 350 GTAGATTCCTTTTGGATGTTGTAGTCA--GACAAGGTTCTACCATCTTCTAGTTGCTTAC 293 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| | ||||| | |||||| || || || ||||| || || |||||| |||| Sbjct 292 CAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTT 233 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | || | || ||||| ||| | ||| || |||| ||| || || || ||||| |||| Sbjct 232 TGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAG 173 Query 15158 TTTTTACAAAAATTTGCATA 15177 |||| || |||||||||||| Sbjct 172 TTTTGACGAAAATTTGCATA 153 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 152 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 93 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || || | ||||| | ||||| || ||| Sbjct 92 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 33 Query 15070 ATTCCTTCCTTGTCACAAATTTT 15092 || ||||||||||| |||||| Sbjct 32 ATACCTTCCTTGTCTTGAATTTT 10 >seq459 Length=185024 Score = 113 bits (124), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || ||||| || ||||| |||||||| ||| Sbjct 176364 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 176423 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || ||||| | ||||| | |||||||| | Sbjct 176424 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCN-----A 176478 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || ||||| || | ||| || Sbjct 176479 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 176538 Query 15130 TCTAAGG-TAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || |||| || ||||| || | ||| || || ||||||||||| || Sbjct 176539 TCCANGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 176589 >seq296 Length=30463 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 30265 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 30206 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 30205 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 30146 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || |||||| | ||| || Sbjct 30145 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 30086 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| ||| || || ||||| |||||| Sbjct 30085 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 30038 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGC 15037 ||||| || ||||| |||||||| || || || |||| ||||||||| || || | Sbjct 30463 GTAGATTCCTTTTGGATGTTGTAGTCA--GACAAGGTTCTACCGTCTTCTAGCTGCTTAC 30406 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 | || | ||||| | |||||| || || || ||||||||||| ||||| | Sbjct 30405 CGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACT 30346 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | || | || || || ||| ||| || ||||| || ||||||||||| |||| || Sbjct 30345 TAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAG 30286 Query 15158 TTTTTACAAAAATTTGCATA 15177 | || ||||| || |||||| Sbjct 30285 TCTTAACAAAGATCTGCATA 30266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389059892375