Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099265.1_202017-02- 08] 675 sequences; 11,390,279 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq296 172 1e-37 seq629 145 1e-29 seq459 145 1e-29 seq370 114 3e-20 >seq296 Length=30463 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 30235 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 30176 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 30175 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 30116 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || ||||| || ||| |||||||| ||||| || || || ||||| ||| Sbjct 30115 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 30056 Query 82794 TTTACAAATATCTGCATTAT 82813 || || || |||||||| || Sbjct 30055 TTGACGAAAATCTGCATAAT 30036 Score = 140 bits (154), Expect = 6e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 |||||||| || || || || || ||||| | |||||||||||||||| || || || Sbjct 30463 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCG 30404 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | || |||||||||||||| || |||||||| || || || || | || Sbjct 30403 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTA 30344 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || ||||| || | ||| || || ||||| || || || || ||||| ||| Sbjct 30343 ACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTC 30284 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| |||||||| Sbjct 30283 TTAACAAAGATCTGCAT 30267 >seq629 Length=350 Score = 145 bits (160), Expect = 1e-29 Identities = 119/145 (82%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 154 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 95 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 94 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAG 35 Query 82702 GTATTCCTTCCTTATCTTGAATCTT 82726 | || |||||||| |||||||| || Sbjct 34 GAATACCTTCCTTGTCTTGAATTTT 10 Score = 138 bits (152), Expect = 2e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 |||||||| || || || || || ||||| | ||||||| ||||||||||| || ||| Sbjct 350 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCA 291 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| || | ||| |||||||| ||||| || ||||| ||||||||||| ||| ||||| Sbjct 290 GCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAAT-TTTACTTTT 232 Query 82734 -ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 || || ||||| || || || ||| || || | ||||| ||||| ||||| | || Sbjct 231 GACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGT 172 Query 82793 CTTTACAAATATCTGCAT 82810 || || || || ||||| Sbjct 171 TTTGACGAAAATTTGCAT 154 >seq459 Length=185024 Score = 145 bits (160), Expect = 1e-29 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 176363 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 176422 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| || Sbjct 176423 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTC-----N 176477 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 176478 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 176537 Query 82763 TTCCAA-AGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 176538 TTCCANGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 176586 >seq370 Length=44060 Score = 114 bits (126), Expect = 3e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 160 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 101 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| ||||||||||| || || ||||| || | |||||| || | Sbjct 100 AGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGT 41 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||||||| || |||||||| |||||||| || Sbjct 40 CTGGAGGAATACCTTCCTTGTCTTGAATTTT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818708728825