Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099275.1_202017-02- 08] 1,218 sequences; 11,507,064 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq968 140 2e-28 seq667 125 5e-24 seq1178 122 6e-23 seq1041 122 6e-23 seq579 105 4e-18 seq502 105 4e-18 seq1171 98.7 7e-16 seq720 98.7 7e-16 seq1157 93.3 3e-14 seq982 86.0 4e-12 seq63 82.4 5e-11 >seq968 Length=103 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 4 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGGGGGAATCTCGT 63 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 64 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 98 >seq667 Length=31584 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 207 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 266 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 267 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 322 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 323 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 382 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 383 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 435 >seq1178 Length=103 Score = 122 bits (134), Expect = 6e-23 Identities = 79/87 (91%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 25910 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTT 25964 |||||||||||||||||||||||||||||||||||| || ||||||| |||||| | Sbjct 1 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGGTAATCCAT 60 Query 25965 TCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||||||| Sbjct 61 TCATGCGCGTCACTAATTAGATGACGA 87 >seq1041 Length=103 Score = 122 bits (134), Expect = 6e-23 Identities = 79/87 (91%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 87 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGATAGGGACAGTGGGAATCTCGT 28 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 |||||| |||||||||||||||||||| Sbjct 27 TAATCCATTCATGCGCGTCACTAATTA 1 >seq579 Length=185230 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 176555 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 176614 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 176615 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 176674 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 176675 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 176734 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 176735 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 176785 >seq502 Length=50336 Score = 105 bits (116), Expect = 4e-18 Identities = 168/239 (70%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| |||||||| ||||| | ||| || | ||||||||| ||||||||||||||||| Sbjct 49940 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 49999 Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198 | || |||| |||| | || |||| ||| || |||||||| || | | ||| Sbjct 50000 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 50055 Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 || || | || | ||||| ||||| |||||| ||| || || | | ||| || Sbjct 50056 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 50115 Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||| |||| || ||||| ||||| |||| || || || || || ||||| Sbjct 50116 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 50174 >seq1171 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| || | |||||||||||||||||||||| | Sbjct 85 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCCCTGTACTTGTTCGCTATCGGTCTCTC 26 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 25 GCCAATATTTAGCTTTA 9 >seq720 Length=103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| || ||||||||||||||||||| | Sbjct 14 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTCCTTGTTCGCTATCGGTCTCTC 73 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 74 GCCAATATTTAGCTTTA 90 >seq1157 Length=103 Score = 93.3 bits (102), Expect = 3e-14 Identities = 63/71 (89%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 33 AAGCCCGTTCCCTTGGCTGGGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 92 Query 25957 TAATCCTTTCA 25967 |||||| |||| Sbjct 93 TAATCCATTCA 103 >seq982 Length=103 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 5/67 (7%) Strand=Plus/Minus Query 25930 TAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||||||||| || |||||||||||||| |||||||||||| |||||||| Sbjct 103 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCCCTAATTAG 44 Query 25985 ATGACGA 25991 ||||||| Sbjct 43 ATGACGA 37 >seq63 Length=220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | |||||||||||| | || ||| || ||||| || ||||||| Sbjct 194 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 135 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| || | ||| || |||||||| || | | ||||||||| Sbjct 134 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCT 79 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTT 38233 | || | ||||| ||||| |||||| Sbjct 78 GGAGGAATACCTTCCTTGTCTTGAATTTT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942227918158