Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099285.1_202017-02-
08] 909 sequences; 11,453,150 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq888 125 6e-24
seq562 122 8e-23
seq445 122 8e-23
seq693 105 6e-18
seq852 98.7 9e-16
seq398 86.0 6e-12
>seq888
Length=220
Score = 125 bits (138), Expect = 6e-24
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | |
Sbjct 204 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 145
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|||||||| || || | || ||||| || || ||| |||| || ||||||||
Sbjct 144 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 85
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|||||||||||||||||||| ||||| | |||||| |||||| | | | ||||||
Sbjct 84 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTC 26
>seq562
Length=104585
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| ||| |||||||| | ||||||||||||||| | ||| || ||| |
Sbjct 93271 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 93330
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||| || || || ||||||| |||||||| || || || |||
Sbjct 93331 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 93390
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | || || | |||||| | | | |||||||| || ||
Sbjct 93391 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 93450
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || || || || || | ||| || || || || |||||
Sbjct 93451 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 93497
>seq445
Length=31504
Score = 122 bits (134), Expect = 8e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860
|||||| | ||||||||||||||| | ||| || || || || | || || ||
Sbjct 1 CAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAG 60
Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920
||| || ||| ||||||| || || || ||||||||||| |||||||| ||||| | ||
Sbjct 61 CTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGAT 120
Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980
||| | ||| ||| ||| ||||| | | || || || | ||||||||||| ||
Sbjct 121 TTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACC 180
Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||| || ||||||||||||||
Sbjct 181 GGTCAAAGTCTTAACAAAGATCTGCAT 207
Score = 102 bits (112), Expect = 7e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859
|||| || || || || ||||| || | ||| ||||| || || | || || |
Sbjct 228 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 287
Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919
|||| || ||| ||||||| |||||||| ||||||||||| |||||||| ||||| | ||
Sbjct 288 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 347
Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979
|||| | ||| ||| | ||| || || | || || || | || |||||||| |
Sbjct 348 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 407
Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||| || || || ||||||||
Sbjct 408 CGGTCAAAGTCTTGACGAAAATCTGCAT 435
>seq693
Length=293144
Score = 105 bits (116), Expect = 6e-18
Identities = 157/221 (71%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| ||| || ||||||||||| ||||| ||||| | ||| || || |
Sbjct 249550 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 249609
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC-TGGAGG 94899
| || | || |||| || || || ||||||| |||||||| || || || ||
Sbjct 249610 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCANGGTGG 249669
Query 94900 AATACCTTCTTTGTCAT--AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957
|||||||| ||||| | ||| |||| |||||| | | | |||||||| ||
Sbjct 249670 GATACCTTCCTTGTCTTGNNAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 249729
Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998
|| || | |||||||| || ||||| | ||| || |||||
Sbjct 249730 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 249770
>seq852
Length=23035
Score = 98.7 bits (108), Expect = 9e-16
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || ||||| | ||| || | ||| | ||| || |||||||| | || || || |
Sbjct 389 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 330
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || | ||| || || || || ||| |||| || ||||||||||| |||||||||
Sbjct 329 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 270
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949
|||||||| ||||| | |||||| | ||| ||| | | | ||||||||
Sbjct 269 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAG 221
>seq398
Length=66313
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| |||| ||| ||||| || ||||| ||||||||||| | ||| || | |
Sbjct 29186 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGT--CAG 29129
Query 94841 ATAG-TGTTGGA--ATCCTCCAGCTG-TTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
|||| ||| | || |||| || || || ||||||| |||||||| || || ||
Sbjct 29128 ATAGANGTTCTACCGTCTTCCAATTGCTTNACCAGCAAAGATCAATCTTTGTTGGTCAGG 29069
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956
|| |||||||| ||||| | || || | |||||| | | ||||||| ||
Sbjct 29068 TGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTATCAATGGTGTCAGAAGATTC 29009
Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
|| || | |||||||| || ||||| | ||| || || |||
Sbjct 29008 AACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 28966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448286106291240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |