Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099285.1_202017-02- 08] 909 sequences; 11,453,150 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq445 125 5e-24 seq562 105 4e-18 seq438 104 2e-17 seq852 98.7 7e-16 seq693 96.9 2e-15 seq888 82.4 5e-11 >seq445 Length=31504 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||| | ||| | ||| |||||| ||||| |||||||||| Sbjct 207 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 266 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| |||| || || |||||||| || | | ||||||||| Sbjct 267 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 322 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| ||||| |||||| ||| || || | || ||||| | | Sbjct 323 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 382 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || |||||||| ||||| || || ||||| |||||||| Sbjct 383 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 435 >seq562 Length=104585 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 93270 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 93329 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | || || ||||| || || ||||| || | | |||||| || | || Sbjct 93330 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 93389 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||||| | | ||| || | |||||| Sbjct 93390 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 93449 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 93450 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 93500 >seq438 Length=1845 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1497 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1438 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1437 GCCAATATTTAGCTTTA 1421 >seq852 Length=23035 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| |||||||| ||||| | ||| || | ||||||||| ||||||||||||||||| Sbjct 397 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 338 Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198 | || |||| |||| | || |||| ||| || |||||||| || | | ||| Sbjct 337 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 282 Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258 || || | || | ||||| ||||| |||||| ||| || || | | ||| || Sbjct 281 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 222 Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCA 38295 | |||||| |||| || ||||| ||||| |||| Sbjct 221 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 185 >seq693 Length=293144 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || || || | |||| || |||||||| ||||| |||| Sbjct 249548 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 249607 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC-GGAG 38207 |||| | |||| || ||||| || || ||||| || | | |||||| || | Sbjct 249608 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCANGGT 249667 Query 38208 GGGACGCCTTCTTTGTC--CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | || Sbjct 249668 GGGATACCTTCCTTGTCTTGNNAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATT 249727 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 ||||||| || || || || ||||| ||||| || || || || Sbjct 249728 CAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 249770 >seq888 Length=220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | |||||||||||| | || ||| || ||||| || ||||||| Sbjct 194 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 135 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| |||| |||| || | ||| || |||||||| || | | ||||||||| Sbjct 134 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCT 79 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTT 38233 | || | ||||| ||||| |||||| Sbjct 78 GGAGGAATACCTTCCTTGTCTTGAATTTT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943489308379