Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099285.1_202017-02- 08] 909 sequences; 11,453,150 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq562 174 4e-38 seq693 147 5e-30 seq398 147 5e-30 seq445 143 6e-29 seq852 141 2e-28 seq424 91.5 4e-13 seq888 84.2 5e-11 >seq562 Length=104585 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| ||||||| ||||| |||| ||||||||| || Sbjct 93282 TCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 93341 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 93342 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 93401 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || || | || || Sbjct 93402 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAAT 93461 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 93462 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 93500 >seq693 Length=293144 Score = 147 bits (162), Expect = 5e-30 Identities = 156/204 (76%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||||||||| | ||||| || | ||| ||||| || Sbjct 249561 TCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 249620 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTC-GGGCGGAATACCTTCCT 225616 ||||| | ||||| ||||| ||||| | || ||||||||| || || |||||||||| Sbjct 249621 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCANGGTGGGATACCTTCCT 249680 Query 225617 TGTCTTGG--ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||| |||||| ||| ||| || || ||||| || | ||| || || || || Sbjct 249681 TGTCTTGNNAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGT 249740 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 ||| ||||| || |||||||| || Sbjct 249741 GATGGTCTTACCAGTCAAAGTCTT 249764 >seq398 Length=66313 Score = 147 bits (162), Expect = 5e-30 Identities = 159/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCA-AAGTTCTCC 225556 ||||| ||| | || | ||||||||| ||||||| ||||| || | | | ||||| | Sbjct 29175 TCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGANGTTCTAC 29116 Query 225557 CATCTTCTAGCTGCTTC-CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 | ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||| Sbjct 29115 CGTCTTCCAATTGCTTNACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCC 29056 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| || |||||||| || | ||| || || || ||| Sbjct 29055 TTGTCTTGGATCTTGGACTTGACATTATCAATGGTGTCAGAAGATTCAACTTCCAAAGTG 28996 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| || |||||||| || | ||| Sbjct 28995 ATGGTCTTACCAGTCAAAGTCTTAACGAA 28967 >seq445 Length=31504 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||| ||||||| ||||| || | ||| ||||| || ||||||||||| Sbjct 4 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTG 63 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | | ||||| || || || |||||||||||||| ||||| || Sbjct 64 CTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTT 123 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||||| ||||| |||| ||| || ||||| ||||| || || || || Sbjct 124 CGACTTAACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGT 183 Query 225690 CAAAGTTTT 225698 |||||| || Sbjct 184 CAAAGTCTT 192 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || ||||| || | ||||| || || || | |||||||| | || ||||| Sbjct 218 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTA 277 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || |||||||||||||| || || ||||| | || |||||| || || || ||||||||| Sbjct 278 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 337 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| || || ||| || |||||||| || || | ||| || || || || Sbjct 338 TTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTT 397 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||| || | ||| | ||||| Sbjct 398 ATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 435 >seq852 Length=23035 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||||||||| |||||||| || ||||| | |||||| || | || ||||| ||| Sbjct 377 CTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 318 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 |||||||| ||||| || || || || | || ||| ||||| || ||||||||||||||| Sbjct 317 TCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 258 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| || || ||| || || || ||||| || | ||| || |||| || || Sbjct 257 TCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 198 Query 225679 GTCTTGCCCGTCA 225691 ||||| || |||| Sbjct 197 GTCTTACCTGTCA 185 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||| ||||||| ||||| || | ||| ||||| ||||||||||| || Sbjct 169 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTG 110 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || | || ||||| || || || |||||||| || ||||| ||||| Sbjct 109 CTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATCTT 50 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || || || || ||||| || | ||| || |||| Sbjct 49 ACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTA 9 >seq424 Length=24726 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || |||||||| || |||||||| Sbjct 22336 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCGGAGACATCACC 22277 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | |||||| || || |||| || ||| Sbjct 22276 ACCTTGGGTTTCAATAACAGGCAAAGCAGTTAAAGAACCA 22237 >seq888 Length=220 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | || ||||| | || ||||| || ||||| || ||||| || Sbjct 162 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 103 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || |||||| || || |||||||||||||||||||| || || || Sbjct 102 GCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTACTTTTG 43 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || || || ||||| || | ||| || |||| Sbjct 42 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517311110846