Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099285.1_202017-02- 08] 909 sequences; 11,453,150 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq562 125 2e-23 seq852 113 1e-19 seq693 96.9 8e-15 >seq562 Length=104585 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 93494 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 93435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 93434 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAA 93375 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||| | |||| || ||| || Sbjct 93374 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATC 93315 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || |||||| | ||| Sbjct 93314 CAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGA 93276 >seq852 Length=23035 Score = 113 bits (124), Expect = 1e-19 Identities = 131/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 || ||||| ||||| ||| || ||||| || || ||||||||| |||||||| || Sbjct 2 ATAACCCTAGAGGTTGAATCTTCCGACACTATTGACAACGTCAAAAGTAAGATTCAAGAT 61 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 |||||||| ||||||||||| || || || | || || || || || || || |||||| Sbjct 62 AAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGAT 121 Query 178077 GGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || || |||| | || || ||| ||||||| ||||| || || || |||| Sbjct 122 GGTAGAAC-CTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCA-CTTG 172 >seq693 Length=293144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 249771 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 249712 Query 177989 CGAGAACGTCAAACAAAAGATT--CAGGACAAAGAAGGAATCCCTCCG-GACCAGCAACG 178045 || || ||||| ||||||| || ||||| ||||| ||||| || ||||| ||| | Sbjct 249711 TGACAATGTCAAGTCAAAGATTNNCAAGACAAGGAAGGTATCCCACCNTGACCAACAAAG 249652 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCC 178104 | | ||||| || || || || | ||||| || || || |||| | || || ||| | | Sbjct 249651 ATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACATTC 249593 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || |||| | || |||||| | ||| Sbjct 249592 AAAAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGA 249555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717180669346