Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900099355.1_202017-02- 08] 1,556 sequences; 11,567,798 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1458 134 2e-26 seq842 120 4e-22 >seq1458 Length=82318 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 31245 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 31304 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 31305 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 31364 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 31365 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 31424 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 31425 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 31484 Query 156048 GGT 156050 ||| Sbjct 31485 GGT 31487 Score = 127 bits (140), Expect = 3e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || ||| |||| || || ||||| || |||| || ||| |||||| | |||| ||| Sbjct 32110 AAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAAC 32169 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || ||||| ||||| || ||||| || |||||||| || ||||||||||||| | Sbjct 32170 GTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTT 32229 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGC 156016 ||||||||||| || |||||| ||||| | || || || ||||| || ||| ||| | Sbjct 32230 GCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATAT-TCAAAAGGAGTC 32288 Query 156017 GACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || || || || || ||| Sbjct 32289 CACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGT 32322 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 ||| ||||| || ||||| || |||||||| |||||||||||||||| |||||||||||| Sbjct 31778 AATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAGCA 31837 Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTT 156028 || ||||| ||||| | || |||||||| || |||||| | ||| | ||||| Sbjct 31838 ACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCATTT 31897 Query 156029 AGTGTTAAGATTAAGAGGCGGT 156050 ||||| ||||| ||||| ||| Sbjct 31898 GGTGTTGAGATTGAGAGGTGGT 31919 Score = 104 bits (114), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 31488 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 31547 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 31548 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 31607 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 31608 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 31665 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 31666 ACATCCAAA 31674 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || ||||| || ||||| |||||||||| ||| |||||||| Sbjct 31985 ATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAGCAA 32044 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATT 156027 || |||||| ||||| || || || || | | ||||||| || | || ||||| | Sbjct 32045 CTAGAAGATGGTAGAACCTTGTCTGACTACA--ACATCCAAAAGGAATCTACTCTTCACT 32102 Query 156028 TAGTGTTAAGA 156038 | ||| |||| Sbjct 32103 TGNTGTCAAGA 32113 >seq842 Length=185056 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 176611 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 176552 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || || || ||||| || ||||| || || || || Sbjct 176551 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 176492 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 176491 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 176432 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 176431 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 176380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731857765089600