Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177835.1_202017-04- 25] 11,496 sequences; 12,629,710 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3708 104 2e-17 seq10263 87.8 2e-12 seq7622 86.0 6e-12 >seq3708 Length=282 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| ||||||||||| | Sbjct 13 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 72 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || || ||||||| | |||| | | |||||| || ||||| Sbjct 73 AAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAGGG 132 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| |||||| || | | || | ||||||| || || ||| Sbjct 133 ATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAACC 192 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| ||| || ||||| |||||||| Sbjct 193 TCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 239 >seq10263 Length=10618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || || | || || ||||| ||||||| | Sbjct 9938 GACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCA 9997 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || | | || ||||| ||||| |||||||| ||||| ||| |||| | |||| Sbjct 9998 AAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGACTTAAC 10056 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | || || ||||| | || | || ||||| ||||| || | Sbjct 10057 GTTG-TCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCT 10115 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 10116 TGACGAAAATTTGCAT 10131 >seq7622 Length=14432 Score = 86.0 bits (94), Expect = 6e-12 Identities = 310/482 (64%), Gaps = 10/482 (2%) Strand=Plus/Minus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 ||||| || |||| |||| || || ||||| | || | ||||| ||||| ||| Sbjct 7391 GGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCC 7332 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | |||||| || | || || || |||||| | | || | | ||||||| Sbjct 7331 ATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAAGGTTTCCCAATCC 7272 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 |||| | | ||| | ||||||||||| ||| | ||||| | || | || ||| Sbjct 7271 CACATGCCAAATGGTTTAGCGTTCCACATATCGAATTGTAAAATACCCTTAGAAGCTGGA 7212 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || |||| ||| || | || || |||||||| ||| ||| || || || Sbjct 7211 GAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAAGA 7152 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 | ||| ||| || |||||| ||||||||| || ||| |||||||| || Sbjct 7151 GTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGAGTTTGAGCTTCTTCCGATTCA 7092 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 | || | |||| || || | | | ||||||| |||||||| ||| | | || ||| Sbjct 7091 AAGGGTAGACGCAACATCATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAGGT 7032 Query 153447 CGATGCTTC-TCGTTG--CTGC--GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 | ||||||| | ||| | | |||||| | | ||||||| ||| || |||| Sbjct 7031 CTATGCTTCATATTTGAATTTCTAGCCTCG-----GGAACTGGATAGTAATTACGGTCGA 6977 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 ||| | |||| | |||| | | ||||||| ||| | | | | ||||||||| || Sbjct 6976 TAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGTGCAATCTCTCGAAATTAT 6917 Query 153562 AG 153563 || Sbjct 6916 AG 6915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496191087093120