Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177835.1_202017-04- 25] 11,496 sequences; 12,629,710 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6472 230 3e-55 seq7622 214 2e-50 seq3762 158 1e-33 >seq6472 Length=7312 Score = 230 bits (254), Expect = 3e-55 Identities = 608/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 162 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 221 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 222 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCGACCAAC 281 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 282 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 341 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 342 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 399 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 400 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 459 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 460 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 519 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 520 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTT 579 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 580 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 638 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 639 CTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACA-A 697 Query 19207 TACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || ||| || || || | || | ||| ||||| || ||| |||| Sbjct 698 GA-ATTCACT-TTCTTTAGGGTCCTTGATGTAGGTATCGATCAACAAGGAGTAAGTTTCA 755 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||||||||| || || || || ||||| |||| |||| |||| || || Sbjct 756 GAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGG 815 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | | || |||| ||||| ||||||||||| || || ||| ||| || ||| Sbjct 816 ACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAA 875 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATC 19439 || || | || ||| ||| | | || | | ||| || | ||||| || Sbjct 876 AAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCATTCTGTTGTTCCAGTC 934 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || ||||| ||||| ||||| | ||||||| | ||||| |||||||| || || || Sbjct 935 ATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCACGCTT 994 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 || | ||| || ||| | || | ||||| || | |||| ||| | || | ||| Sbjct 995 GTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTCTCCTTGTCTTC 1054 Query 19560 TTTAAGAATAGGTTCC 19575 || | | ||||||| Sbjct 1055 ATTCAACAAAGGTTCC 1070 >seq7622 Length=14432 Score = 214 bits (236), Expect = 2e-50 Identities = 564/860 (66%), Gaps = 3/860 (0%) Strand=Plus/Minus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| |||| |||||| || || |||| || | ||||| | ||| Sbjct 6872 AGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACGATT 6813 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||||| ||| ||||||||||||| || || || || || | ||||| Sbjct 6812 TCACAACATAAGTTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGTTA 6753 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 ||||||||||| |||| ||| |||||||| || |||||| |||| | || | || | Sbjct 6752 CATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGGCA 6693 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| |||| Sbjct 6692 TACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGAGTA 6636 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| | ||||||||||| || |||||| |||||| || || || | || | Sbjct 6635 TATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGTGAA 6576 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | |||| | |||| | || || | |||| || | ||| || ||||| ||| Sbjct 6575 AATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATAGA 6516 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || || ||||| || | | | |||||| || ||| | || | | || | | Sbjct 6515 GCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCGACA 6456 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| ||||||||||| || || | | || | |||| |||| || Sbjct 6455 AAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTG 6396 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||| || || || | ||| | ||||||||| || |||| | | ||| || | | Sbjct 6395 TTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATCAAC 6336 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 || ||||| |||| ||||| || | |||||| || | | | || || | || Sbjct 6335 CCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGATA 6276 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| |||| || || | |||||| ||| | ||||||||| Sbjct 6275 TGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 6216 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | || ||||| ||||||||| ||||| Sbjct 6215 ATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGT 6156 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | || ||||| ||||| || || ||| | || || | || | ||| Sbjct 6155 GGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAA 6096 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| || | | ||||| || ||||| | ||| ||||||| | ||||||||| Sbjct 6095 TTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCATT 6036 Query 48717 AACATATATTGAGGTCTTTC 48736 | || || ||||| | ||| Sbjct 6035 ACCAAATGCTGAGGACGTTC 6016 >seq3762 Length=7786 Score = 158 bits (174), Expect = 1e-33 Identities = 574/892 (64%), Gaps = 7/892 (1%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 2288 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 2229 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 2228 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 2170 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 2169 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 2112 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 2111 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 2053 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 2052 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 1993 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | |||||||||||| Sbjct 1992 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATG 1933 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 1932 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 1873 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||| || || |||| | | ||| || | | ||| || || |||| || || Sbjct 1872 ACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 1813 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 1812 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 1753 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 1752 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 1693 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 1692 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 1633 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 1632 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 1573 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 1572 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 1513 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 1512 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 1453 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTT 48847 |||| |||||| || | |||| | ||||| || || | | | ||||| Sbjct 1452 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTT 1402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 204/301 (68%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 48897 TAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATA 48956 ||||||||||| ||||| | | |||| |||| | |||| |||||| | |||||| || Sbjct 1212 TAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAATTAGAAATG 1153 Query 48957 GATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAG-ATAT 49015 | ||||| || |||| | || ||||||||||||| || || ||| || | || | Sbjct 1152 GCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATAAGCGCATGT 1094 Query 49016 TTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAAC 49075 ||| |||||||| | |||| ||| | || || |||||| ||| | || ||| | Sbjct 1093 TTCAGCTGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACCAGAAATGA- 1035 Query 49076 TTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttt 49133 | | || | | || || | || ||||| | ||| | ||||| ||||| | Sbjct 1034 -TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAGCATAAGCGT 976 Query 49134 tttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATA 49193 ||| | || ||||| ||||| || | | |||||||||||||| | ||||||| Sbjct 975 GATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCTC-TTTTATA 917 Query 49194 A 49194 | Sbjct 916 A 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562028024965440