Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177845.1_202017-04- 25] 2,975 sequences; 11,604,234 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1105 167 5e-36 seq2779 152 1e-31 seq1880 138 3e-27 seq2698 132 1e-25 seq975 125 2e-23 seq1653 91.5 3e-13 >seq1105 Length=21813 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | ||| || ||||| ||||||||||| ||||| ||| Sbjct 10064 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 10005 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| ||||| || || |||||||| | || |||||||| ||| Sbjct 10004 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 9945 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || || ||||| ||| ||||| || || || | || ||| || ||| Sbjct 9944 GGAATACCTTCCTTGTCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTC 9886 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| || || || ||||| || || || ||||| Sbjct 9885 AACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 9835 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || |||||||| || || || |||||||| || || ||| Sbjct 9608 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 9549 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||||||||||||||| || || || ||||| || | || |||||||| ||| Sbjct 9548 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 9489 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | || || || || | ||||||| || ||| Sbjct 9488 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 9429 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || ||||| || | || || || || |||||||| Sbjct 9428 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 9379 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || || |||||||| ||||||||||| || || Sbjct 10503 GTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCG 10444 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || || || ||||| || ||||| || || ||||| || | || Sbjct 10443 GCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 10384 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| |||||||| || ||||||||||| || ||||| Sbjct 10383 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 10324 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 10323 TTGACAAAAATTTGCAT 10307 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | ||||||||||||||||| || || || Sbjct 9803 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCG 9744 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 9743 GCAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTA 9684 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | ||| ||||||| || || || ||||| || | || Sbjct 9683 ACGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTC 9624 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 9623 TTAACAAAGATCTGCAT 9607 Score = 120 bits (132), Expect = 7e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| | |||||||| ||||||||||| || ||| Sbjct 10275 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCA 10216 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 |||||||| | ||||||||||| ||||| || ||||||||||| |||||| Sbjct 10215 GCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATC 10165 >seq2779 Length=7330 Score = 152 bits (168), Expect = 1e-31 Identities = 377/564 (67%), Gaps = 26/564 (5%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 ||||| | |||| |||||||| ||||| | |||||| | ||| ||||| | || | Sbjct 6355 TACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATC 6414 Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861 || ||||| || || ||| |||| || ||| || || || ||||||| Sbjct 6415 CATGACTGGAACAACAGAATGAACGAGAACGAGAGATTTTTCATTTCCAGAGTTCTTGCC 6474 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 ||||| || | | ||| ||||| ||||| ||||| | || || || |||| || Sbjct 6475 TTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAA 6534 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| || || | |||| ||||| ||||| || || ||||||||||| Sbjct 6535 GTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCAC 6594 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040 || || | ||| | || || |||||||| || | || | ||||||| | Sbjct 6595 TCTGAAACTTACTCCTTGTTGATCGATACTTACATCAAGGAC-----CCTAAAGAAAGTG 6649 Query 269041 ACTATTTTCTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATG 269091 | | | || ||| ||| | || || | | | ||||||| | ||||| Sbjct 6650 AAT-TCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAATG 6704 Query 269092 GGCTCTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGC 269148 |||| | | |||||| | || | |||||| || ||||| ||||||| ||||| Sbjct 6705 GGCTTTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGC 6764 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 | | | |||||| | || || || || || |||||| | || || |||||||| || || Sbjct 6765 CTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAG 6824 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | ||||| || ||||| || || ||||||||||| | || ||||||||||| || Sbjct 6825 AGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCA 6884 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 | |||||| || || || || || Sbjct 6885 CACCGACTTTGCATGCTTGTTGTT 6908 >seq1880 Length=17810 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 477 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 536 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 537 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 596 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || ||||| || | ||| || || ||| Sbjct 597 GGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTATCAATGGTGTCAGAAGATTCA 656 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 657 ACTTCCAAAGTGATGGTCTTACCAGT 682 >seq2698 Length=18034 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || || || |||||||| ||||| || |||||| Sbjct 258 ATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA 317 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 318 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 377 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 378 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 437 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | || || ||||| Sbjct 438 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 478 >seq975 Length=16953 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| |||||||| || || || || ||||| || | ||||||||| ||||| | ||| Sbjct 3100 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 3041 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 3040 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 2981 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || || || |||||||||||||| || Sbjct 2980 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTT 2921 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 2920 AAAGTCTTGACGAAAATTTGCATCTTG 2894 >seq1653 Length=149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 |||||||||||||| | ||| || |||||||| || | || ||||| ||||| || || Sbjct 149 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 90 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| | || ||||| || | ||| || || ||| || || Sbjct 89 CCTTCCTTGTCTTGGATCTTGGACTTGACATTATCAATGGTGTCAGAAGATTCAACTTCC 30 Query 104516 AGTGTAATAGTCTTACCAGT 104535 | || || ||||||||||| Sbjct 29 AAAGTGATGGTCTTACCAGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151354511931300