Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177855.1_202017-04- 25] 3,479 sequences; 11,610,080 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1044 149 7e-31 seq3308 136 5e-27 seq1332 129 7e-25 seq935 125 8e-24 seq265 118 1e-21 seq380 114 1e-20 seq1863 111 2e-19 seq483 86.0 7e-12 >seq1044 Length=12294 Score = 149 bits (164), Expect = 7e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27424 ACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTG 27483 || || || || |||||||| || || |||||||| || ||| | |||| || | Sbjct 2 ACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCTGACACTATTGACAACGTT 61 Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | |||||||| |||||||| || ||||||||||||||||| | | |||||||| Sbjct 62 AAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCC 121 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 ||||||||||| || |||| | | || || | ||||| ||| | |||||||| |||||| Sbjct 122 GGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACT 181 Query 27604 CTTCATCTAGTCTTG 27618 ||||| || |||||| Sbjct 182 CTTCACCTTGTCTTG 196 >seq3308 Length=1291 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| || || ||||| || | Sbjct 520 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 461 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || |||||||| || ||||| || ||||| Sbjct 460 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 401 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || |||| | | || | | ||||| || Sbjct 400 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 341 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||||| || | |||||| Sbjct 340 ATCCAAAAGGAATCTACTCTACACTTGGTCTTG 308 >seq1332 Length=5694 Score = 129 bits (142), Expect = 7e-25 Identities = 320/476 (67%), Gaps = 21/476 (4%) Strand=Plus/Minus Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCG 81281 || ||| |||||||||| ||||| ||||| || || | ||||| || | ||| || Sbjct 1939 TCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCA-CG 1881 Query 81282 CGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCA 81341 ||||| | ||| ||||| | | || | ||| || | || || |||||||| Sbjct 1880 AATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCA 1821 Query 81342 TGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAAC 81397 ||| ||||| || | ||| | || || ||| | |||||||||| || |||| Sbjct 1820 TGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTT-ATTACCACCCTGGTCAACATAAC 1762 Query 81398 GGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTAC 81457 ||||||| || || ||||| | |||||| || | ||| | || |||||| |||| Sbjct 1761 GGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTAC 1702 Query 81458 CCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACC 81517 | | || || || | | || | || ||| ||||| || ||||| | | Sbjct 1701 CAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAG--C 1644 Query 81518 ACTTT--GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTT 81575 | ||| |||||| |||||| |||| ||| || ||||| |||||||| || | Sbjct 1643 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 1584 Query 81576 TTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAAC 81633 |||||| ||| ||||||||| ||||| ||||| |||| ||| |||||||||||| Sbjct 1583 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGG--TTTTGGAGTACCGGCATTGAAC 1526 Query 81634 AGTGTTGGGGTCGCGTGAATGAAATAACGGTTT---GACATCAGGTCATAGGTTTC 81686 | ||||| | |||||| | ||||| ||| ||||||| || ||| ||||| Sbjct 1525 AACGTTGGAGAGGCGTGAGTAAAATA---TTTTAGAGACATCAAGTTATACGTTTC 1473 >seq935 Length=14032 Score = 125 bits (138), Expect = 8e-24 Identities = 338/512 (66%), Gaps = 15/512 (3%) Strand=Plus/Plus Query 81232 TTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTC 81290 ||||||||| ||||||||||| || || | ||||| || | ||| || || || Sbjct 7815 TTCATGAAAAGATCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCA-CGAATTTCTTC 7873 Query 81291 ATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAG 81350 | ||| || | | | |||| |||||| | ||| || |||||||||||||||| Sbjct 7874 CTTACCATGTGTTTTTCTGATATCGACAAAGTCGAAGATATCTGCATGCCATGGCTCCAA 7933 Query 81351 ATACACGGCGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 | | ||||| | || |||| || ||||||||| || ||||||||||| Sbjct 7934 GAAAAGGGCGAAAGCACCAGGTCTCTTGTTAC---CACCCTGGTCCACATAACGGGCAGT 7990 Query 81405 CGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 || || ||||| | |||||| || | || | ||| |||||| ||||| |||| Sbjct 7991 ATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTACCAGCGAT 8050 Query 81465 ACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT-- 81522 | || || ||| || | ||| |||| |||||| | ||||||| || ||| Sbjct 8051 ATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACCAACACCACCTG--CAGTTTTG 8108 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 |||||| |||||| |||| || |||||||| || ||||| || | |||||| Sbjct 8109 GAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCGATAGAGTCATCCTTCATG 8168 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 ||| |||||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 8169 GCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACCAGCGTTGAATAAAGTTGGG 8228 Query 81643 GTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATA 81702 | |||||| |||| || | ||||||| | ||| || | | || | ||| Sbjct 8229 GAAGCGTGAGTGAAGTATCTTAACGACATCAAATTATAAGTCTTCAGCACAGATTCGATA 8288 Query 81703 TCGTCACCGTGAATACCGATAGCTACACGCAT 81734 ||| ||| || ||||| | || |||||||| Sbjct 8289 TCGCTACCATGGATACCTAGCGCCACACGCAT 8320 >seq265 Length=22974 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 |||| | || || | | ||| || ||||| | || || ||||| || ||| | || || Sbjct 5861 TATTCCAATTTTGTACAGCTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGT 5802 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||| || ||| | ||||| ||| | ||| | || || || |||||||| || || || Sbjct 5801 TGAATCTTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCC 5742 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || ||||| || | | || ||||||||||||||| | || || | | | || ||| | Sbjct 5741 ACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATC 5682 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||| || ||||||||||||||||| | ||| | |||||| Sbjct 5681 TGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTCTTG 5639 >seq380 Length=9850 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| || || || ||| | |||||||| || Sbjct 198 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | ||||| ||||||||||| || || |||||||| || Sbjct 138 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 79 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| |||||||| || || || | | | ||| | | ||||| || Sbjct 78 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 19 Query 27586 GTCCAAAAGGAATCCACT 27603 ||||||||||||| ||| Sbjct 18 ATCCAAAAGGAATCTACT 1 >seq1863 Length=22686 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||||||||| | || || ||||| || ||| | || ||||| || ||| | |||| Sbjct 10788 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 10729 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || || |||||||| || || || || ||||| || | | Sbjct 10728 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 10669 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||||||| | || || | | | ||| | | ||||| || | ||||| Sbjct 10668 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 10609 Query 27595 GAATCCACTCTTCATCTAGTCTTG 27618 ||||||||| | || |||||||| Sbjct 10608 GAATCCACTTTGCACTTAGTCTTG 10585 >seq483 Length=154 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||| ||||| || || || || || ||||| || || ||| | | |||||||||||||| Sbjct 115 TAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAA 56 Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||| || |||| | | ||| | | ||||| || ||||||||||||| ||| Sbjct 55 GCAACTAGAAGATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285598626480