Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq2827 293 7e-75 seq4910 206 8e-49 seq4583 172 2e-38 seq7113 134 4e-27 seq5652 111 5e-20 >seq2827 Length=619 Score = 293 bits (324), Expect = 7e-75 Identities = 244/296 (82%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 42172 GACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTC 42231 ||||||||||| |||| |||||| || ||||||||| |||||| |||||||||| |||| Sbjct 619 GACCTCGCCGATGACGGCGGTCTCGACGTCCCACTTGGCGGTGATGGCGAGGAACTCGTC 560 Query 42232 GAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTC 42291 ||||||| | |||| ||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 559 GAGCTTCTCCGGCGCGACGACCGCCATCATGCGCTCCTGCGACTCGGACATGAGGATCTC 500 Query 42292 CTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCT 42351 | || |||||| |||||||| || || |||| ||||||| | |||||||| |||| Sbjct 499 GCCCGCGTTGAGCGTCGGGTCGCGCAGCAGGACGTCGTCGAGCCACACGTGCATGCCGCC 440 Query 42352 GTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTG 42411 || |||||| | ||||||||| ||| ||||| |||||||| || || ||||||||||| Sbjct 439 GTCGCCGTTCGAGGCGAGCTCCGACGTCGCGCACGAGATGCCGGCGGCACCGAGGTCCTG 380 Query 42412 GATCGCCTCGACCAGCT-CGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACC 42466 ||| |||| || | || || |||| || ||||| ||||||||||||||||| ||| Sbjct 379 GATGCCCTCCACGACCTGCGCCGCG-TAGAGCTCGAGGCAGCACTCGATGAGGACC 325 Score = 187 bits (206), Expect = 7e-43 Identities = 162/201 (81%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 42536 GAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACG 42595 |||||||||||||| || |||||||| ||||| || |||||||| || |||| || ||| Sbjct 201 GAGGCGAGGATCGAGGCACCGCCGATGCCGTCGCCGCCCGTGCGGGCGCCGAACAGCACG 142 Query 42596 ACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCC 42655 ||||||||||| | ||||| ||||||||||| | || ||||||||| || |||||||| Sbjct 141 ACCTTGTTGCCGACGCCCGAGGCGTTGGCGAGGTGGATGTCCTCGTGGCGCAGCACGCCG 82 Query 42656 ACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCG 42715 | ||| |||||||| || || ||| |||| || || ||||| ||| ||||||| Sbjct 81 AGGCACAGCGCGTTGACGAGAGGGTTGCCCTGGTACGAGGAGTCGAAGACGAGCTCGCCG 22 Query 42716 CCGATGTTCGGCAGACCGAGG 42736 |||||||||||||| |||||| Sbjct 21 CCGATGTTCGGCAGGCCGAGG 1 >seq4910 Length=322 Score = 206 bits (228), Expect = 8e-49 Identities = 228/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 42913 GAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTC 42972 |||||| ||||||||||| ||| |||||||||| || ||||| || || |||| ||| Sbjct 3 GAACGACGGGTGGTTGTGCGACTCGACCTTGAACGTCACGGCCCAGCCGTCACCGATGTC 62 Query 42973 GATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTCGCGCATCTCGTCCGAGAC 43032 || |||||||||||||| || || ||||| | ||| ||| ||||||||||| | Sbjct 63 GACGACGCCCGCGTTCTCGCCGATGCCGACGAGCAGGTGCTTCTTCATCTCGTCCGTGGT 122 Query 43033 CTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCA 43092 | | |||||| || |||| || |||| ||||||||| ||||||||||| ||||| Sbjct 123 CGCCGCGCCGAACTTCGACAGGTGGACCTTGGACGACTTGTACGAGCAGTGCTCGGACCA 182 Query 43093 CATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGGCCGAGGATCTCCTTGAT 43152 ||| || ||||||||||| ||||| | | ||||||||||| || ||||| || ||| Sbjct 183 CATGACGGAGTACATCGCGAGCTCCGCGGCCGTGGGGCGGCGCCCCAGGATGTCGCGGAT 242 Query 43153 CCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGCGTAGGGCTGCTCCTTCTCCGGAGT 43212 | | ||||||||| ||||||||| ||| | ||| | ||||| ||| || || || Sbjct 243 GCGCTGGTACTCGTCTGGCTTGAGGCCGAGCTCGGCGAACGGCTGGACCTCGTCGGGCGT 302 Query 43213 CGCG 43216 ||| Sbjct 303 GGCG 306 >seq4583 Length=233 Score = 172 bits (190), Expect = 2e-38 Identities = 168/214 (79%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 11085 CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTTCGACCGTCAGGCGAACGAGT 11144 ||||||| |||||||| | || || |||||||| ||||||||||| ||| ||||||||| Sbjct 213 CGGTGGCCAACTTCACGGTGGCGTCCACGCCGCGGACCTTCGACCGCCAGTCGAACGAGT 154 Query 11145 GGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGTGGCGCGAGTTCGCGGAGCAC 11203 |||||||||| || | |||||| | || ||| || | ||||||||| ||||||| || Sbjct 153 GGAAGGACGGGGACACCCTGTTCATGCGCTGC-TCGATCTGGCGCGAGGCCGCGGAGAAC 95 Query 11204 GTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCATCCGGACGCCTGAAGCAGCGC 11263 || |||| |||||||| ||||||||||| ||||||| || ||||| |||||| Sbjct 94 GTCGCGGAGTCGCTGACGAAGGGCATGCGCGTCATCGTGCAGGGCCGCCTCGTCCAGCGC 35 Query 11264 TCCTACCAGGACCGCGAGGGCAACAACCGCACCG 11297 || ||| || ||||||||| | || ||||||| Sbjct 34 TCGTACGAGACCCGCGAGGGGGAGAAGCGCACCG 1 >seq7113 Length=426 Score = 134 bits (148), Expect = 4e-27 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 44534 CACCTCCCGCAACATACGCGGAGGCTGGTGGGCCACCTGGCTCATGGGCGGGCTGAACTA 44593 |||||| || ||||| ||||| || |||||| | | |||||||||||||| |||| Sbjct 8 CACCTCGCGGAACATCCGCGGCGGGTGGTGGATGAACATCCTCATGGGCGGGCTCAACTT 67 Query 44594 CCAGATCGAGCACCACCTCTTCCCCAGCATGCCTCGGATCCATCTGTCCCAGGCAAGGAA 44653 |||||||||||||||||| ||||| |||||||| || || || | | ||| | | Sbjct 68 CCAGATCGAGCACCACCTGTTCCCGAGCATGCCGCGCCCGCACCTCGCGCGGGCCCGCGA 127 Query 44654 GATCGTGCGCGAGCACTGCACCGCA-AACGACGTGCCGTACACCGAGACCACACTGCTTC 44712 ||||||||||||||||||| |||| || | |||||||||| ||||| | || | | Sbjct 128 GATCGTGCGCGAGCACTGC-GCGCACCTCGGCCTGCCGTACACGGAGACGAGCCTCGTGC 186 Query 44713 GGTCATACGCCATCGT 44728 ||| ||||| ||||| Sbjct 187 AGTCCTACGCGATCGT 202 >seq5652 Length=151 Score = 111 bits (122), Expect = 5e-20 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 41803 GCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTCCTCATCGAC 41862 || |||||||||||||||||| ||||||| ||||| |||||||||| ||| ||||| Sbjct 2 GCCGTAGCGGCCGTTCGCGTCCGTCGCGAGCGCGACGCCGAGGCCCGTGCTCTCGTCGAC 61 Query 41863 GCGGATCATGCCGGCGTCGTCGGGGAAGCTGAGGGCCGTGTTGCCGAGCACGTAGTAGTC 41922 ||||| || ||| | ||||||||| ||| || |||||||| | ||| | ||| Sbjct 62 GCGGACCACGCCCGAGTCGTCGGGCTGCGCGAGCGCGGTGTTGCCCTGGACGAACCGGTC 121 Query 41923 GTACTGGTTCGTGATCCAC 41941 |||||||||||| | |||| Sbjct 122 GTACTGGTTCGTCACCCAC 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148233173919462