Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3505 338 2e-88 seq3261 230 8e-56 seq6680 221 4e-53 seq4505 111 5e-20 seq2881 100 9e-17 seq3903 93.3 1e-14 >seq3505 Length=1005 Score = 338 bits (374), Expect = 2e-88 Identities = 480/662 (73%), Gaps = 15/662 (2%) Strand=Plus/Minus Query 38783 CGAGTCGAAGGCACCGGCCTTGATCAGGGACTCGATGGCTCGCTTGCT-CAC-CGTCGCC 38840 ||||||||| ||||| |||||||| || |||||||||| |||||| | ||| | || | Sbjct 870 CGAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTTGCACACCACGGC 811 Query 38841 TGAGTCGCTGCCTTCAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGGAGT 38900 | | || | |||||||| | | || |||||| ||| | || || || Sbjct 810 CGGCACCTTGTCG--AGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGC-GT 754 Query 38901 TCAGC-GATCTCCGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCG 38959 | | |||| | |||| | | | |||| ||||| |||| | || || |||||||| Sbjct 753 GCGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCG 694 Query 38960 GATCTCGT-GCTCCCCGTTGGGGGTGAACGA-GCTGTTCGAGACCGACACGTCGGGCGGC 39017 ||| ||| || | ||| ||||||| || | |||| | |||||| ||||| Sbjct 693 GATGTCGCCGCCCACCGC----GGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGG 639 Query 39018 AGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCG 39077 || || | | ||||||||| |||| |||||| ||||| ||||| ||||||| Sbjct 638 AGCACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCG 579 Query 39078 TCGCCCACCGAGGTG-AGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCA 39136 |||| ||| | || || |||||||||||||| | |||||||| || ||| | | Sbjct 578 TCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAA 520 Query 39137 CGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCC 39196 |||||| | |||||| | ||| |||||| | || |||||||||||||||||||||||||| Sbjct 519 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 460 Query 39197 AGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTC 39256 ||||| ||||||||| |||||| || |||||||| || |||| ||||| || ||||| Sbjct 459 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 400 Query 39257 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39316 || ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 399 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 340 Query 39317 CATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAAC 39376 |||||| || || |||||||||||||| || || | ||||||||| | || ||| || | Sbjct 339 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 280 Query 39377 CTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAG 39436 | |||| |||||||||||||||| ||| | | | ||| ||| |||||||||| || Sbjct 279 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 220 Query 39437 GG 39438 || Sbjct 219 GG 218 Score = 161 bits (178), Expect = 3e-35 Identities = 142/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 39419 GTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTG 39478 ||| |||||||||| |||| || | | ||| |||||||| ||| |||| |||| | Sbjct 179 GTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAG 120 Query 39479 CCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTA 39538 ||||||||| || || |||||||||||||| || || ||||||||| ||||| ||||| Sbjct 119 CCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTA 60 Query 39539 CAGCGCGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAG 39595 |||||||| |||||| |||| ||| ||||| ||||||||||||| | |||| || || Sbjct 59 CAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAG 3 >seq3261 Length=292 Score = 230 bits (254), Expect = 8e-56 Identities = 226/292 (77%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 40088 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGC 40147 ||| |||||||| || | | |||||| | |||| | || |||| |||||| | ||| Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233 Query 40148 GTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTT 40207 | |||||||| ||||| || ||||||| ||||| |||| | |||||||| Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173 Query 40208 CCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATC 40267 | ||||||||| |||||||||| || || || || || |||||||||| |||||| || Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113 Query 40268 GGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGG 40327 |||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53 Query 40328 GTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40379 |||||| |||||||| || | || ||||| | ||| || || || || ||| Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1 >seq6680 Length=369 Score = 221 bits (244), Expect = 4e-53 Identities = 265/360 (74%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 39588 CGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTG 39647 || || || | |||||| | |||||||||||||||||| || ||||||||| || | Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310 Query 39648 GCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCAGGTCGACGTGCTCC 39707 || ||||||||||| | || |||||| || | || ||| | |||| ||||| Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250 Query 39708 CCACGGTTGAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCG 39767 | ||| | ||||||||||| ||||||| | | ||||||||||||||| |||||| Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190 Query 39768 AGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATC 39827 |||||||||||||| | ||||| || ||||| | |||||||||||||||| ||||| Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130 Query 39828 GTCGCGCCGTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGAGGCTCGTCGGAC 39887 |||||||||||| || || | | ||||||| ||||| || || ||| ||| Sbjct 129 ACCGCGCCGTCCTGAGGACGGCGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGAC 70 Query 39888 ATGATCACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCG 39947 ||||| || || || |||||||| ||| |||||| || || |||| ||| ||||| Sbjct 69 ATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTCAGCCCCTCGATACCCCGCGCG 10 >seq4505 Length=425 Score = 111 bits (122), Expect = 5e-20 Identities = 201/289 (70%), Gaps = 9/289 (3%) Strand=Plus/Plus Query 40174 TCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGC 40233 |||||| ||||||| | | | |||| || || | ||||| |||||||||||| Sbjct 39 TCGCGACCTGCGCGGCGTGCGTGCGCCCGAACGTCTCGTAGACGTGCTGGATGACCTCCT 98 Query 40234 CACGACGC-CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40292 | || ||| | | | |||| ||||||||||| || ||| | ||||||||||| Sbjct 99 CGCGCCGCGCCGAC-TCGATGTCGATGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCG 157 Query 40293 AGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40352 |||||||||||||| | || ||||||| || || ||||| | | ||||| ||||| || Sbjct 158 AGGAAGCGCTCGAACAGCAGGCCGTGCTTCACCGCGTCGACGGCCGTGATGCCGAGCGCG 217 Query 40353 TAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCC 40412 ||| |||| || || || ||||| ||||| || ||| || ||||| ||| Sbjct 218 TAGCAGACCGCGGAGTTCGCGGCCGAGCCGCGCCCCTGGGCGA---GGATCCCGT--TCC 272 Query 40413 TTCGCC--CAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAA 40459 | || | | || || ||| ||| |||||||||||| |||||| Sbjct 273 TGCGGCAGAACTCGACGAGGTCGTAGACCACGAGGAAGTACCCCGGGAA 321 >seq2881 Length=589 Score = 100 bits (110), Expect = 9e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38573 CTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCGCGCTCGATGGC 38632 ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || Sbjct 162 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 103 Query 38633 GAGGCGCGGACCCTTGCTCCAGTCC 38657 ||||||| | |||| ||||||| Sbjct 102 GAGGCGCTGCTTCTTGTCCCAGTCC 78 >seq3903 Length=451 Score = 93.3 bits (102), Expect = 1e-14 Identities = 265/403 (66%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 40839 ACGTAGTGGGAATCGTTCGTGACCACCGGAGTGAGCGC-GAGGTGCTTCCCGAGCCGGTA 40897 ||||||||| |||||||| | || | | | |||| || | || | |||| || Sbjct 5 ACGTAGTGGAGGTCGTTCGTCGCGACGAG-GCGCGCGCCGATGGTCTCCGCGAGGCGCAG 63 Query 40898 CAGGTCGTCACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAGCAGGTA 40957 ||||| | |||||| |||||| ||||| ||||||||||||| |||| | | | Sbjct 64 GAGGTCCTTCGTGACCCGCGTCTCGATGTCGATCCCGTGGTCCATGAGCTCGACGAAGAA 123 Query 40958 CCGGTCACGCCCGAAGACCTCCAGGTACCGACCAGCCTCCTTCACGGCCTCGTCGTACTG 41017 || || ||||||| ||| || | || ||| | ||| |||||||| |||| Sbjct 124 GTTCTCGCGGCCGAAGATGTCCTGGAGCTCGCCCGCCGTCCGCACCGCCTCGTCCCACTG 183 Query 41018 CCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCC 41077 |||||| || || ||| |||| | || ||||| || |||| |||| ||||| Sbjct 184 TCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTCGTCGCGACGAGGCC 243 Query 41078 CTCGTTGTGCTCGGCGACCAGCTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTC 41137 || | || | || || ||| |||||||||||| |||| || | | | ||||| Sbjct 244 CTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTGCCCATCTGCCCCTC 303 Query 41138 CTGGTACGACCGAGAGCTGA--GCTTCATGAGGTTGTGGAGCCCGGTCTTGTTCGTGGAG 41195 | ||| |||| | || | | |||||||| || || |||| | | | | Sbjct 304 GAGCGACG--CGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCTCGTTGTCCTTCGCG 361 Query 41196 AGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGACACGTCGT 41238 || | ||| | |||||||||||| ||| |||| ||||||| Sbjct 362 AGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAGACGTCGT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163310228671734