Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04-
25] 7,513 sequences; 13,166,602 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq3505 379 7e-101
seq3261 242 1e-59
seq6680 188 2e-43
seq3903 98.7 3e-16
seq4505 93.3 1e-14
seq2881 86.0 2e-12
>seq3505
Length=1005
Score = 379 bits (420), Expect = 7e-101
Identities = 484/655 (74%), Gaps = 15/655 (2%)
Strand=Plus/Minus
Query 38707 CGAGTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCGCGCTTGCT---CACGGTGGC 38763
||||||||||||||| |||||||| | |||||||||| ||||||| | ||| |||
Sbjct 870 CGAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTTGCACACCACGGC 811
Query 38764 CTGAGTCGCTGCCTTCAAGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAG 38823
| | | || | | |||||| | | || |||||| ||| | || ||| |
Sbjct 810 CGGCACCT-TGTCG--AGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGC-G 755
Query 38824 TTCGGC-GATCTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGC 38882
| ||| |||| || |||| | | | |||| ||||| |||| | || || |||||||
Sbjct 754 TGCGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGC 695
Query 38883 GGATCTCGCTCTCCCCGTTCGGGGTGAAGGA-GCTGTTCGAGACCGACACGTCGGGCGGC 38941
|||| |||| || | || |||||| || | |||| | |||||| |||||
Sbjct 694 GGATGTCGCCGCCCAC---CGCGGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGG 639
Query 38942 AGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCG 39001
|| || | | ||||||||| |||| |||||| ||||| ||||| |||||||
Sbjct 638 AGCACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCG 579
Query 39002 TCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 39060
|||| ||| | || || | |||||||||||||| | |||||||| || ||| ||| |
Sbjct 578 TCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAA 520
Query 39061 CGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39120
|||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| ||
Sbjct 519 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 460
Query 39121 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC 39180
||||| || || ||| |||||| ||||||||||| ||| ||| ||||| || |||||
Sbjct 459 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 400
Query 39181 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39240
|| ||| |||||| ||||||||||||| | || | ||| ||||||||||||
Sbjct 399 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 340
Query 39241 CATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGC 39300
||| || || ||||||||||||||||| || || ||| || |||||||||||||| ||
Sbjct 339 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 280
Query 39301 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCC 39355
| |||| |||||||||||||||| |||||| ||||| ||| ||| |||||||||
Sbjct 279 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCC 225
Score = 158 bits (174), Expect = 4e-34
Identities = 147/187 (79%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 39333 CGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGA 39392
|||| ||| ||| ||||||||| ||||||| ||| | ||| ||||| || ||| ||
Sbjct 189 CGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGA 130
Query 39393 TCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGAC 39452
|| |||| | || ||||| || || || ||||||||||| ||| | ||||||||| |
Sbjct 129 TCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGC 70
Query 39453 CCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGC 39512
|||| ||||||||||||| ||||||||||| ||| ||||| ||||| ||||||| | |||
Sbjct 69 CCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGC 10
Query 39513 GGAGCAG 39519
| || ||
Sbjct 9 GCAGGAG 3
>seq3261
Length=292
Score = 242 bits (268), Expect = 1e-59
Identities = 229/292 (78%), Gaps = 0/292 (0%)
Strand=Plus/Minus
Query 40012 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 40071
||| |||||||| || | | |||||| | | || | || |||| |||||| | |||
Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233
Query 40072 GTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTT 40131
| |||||||| |||| |||| ||||||| ||||| |||| | ||||||||
Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173
Query 40132 CTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTC 40191
||| |||||||||||||||||||| ||||| || || || |||||||||| ||| |||||
Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113
Query 40192 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGG 40251
|||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53
Query 40252 ATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303
||||| |||||||| || | | ||||| | ||| || || || ||||||
Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1
>seq6680
Length=369
Score = 188 bits (208), Expect = 2e-43
Identities = 251/349 (72%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 39512 CGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTG 39571
|| || || | |||||| | |||||||||||||||||||| ||||||||||||
Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310
Query 39572 GCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCC 39631
|| ||||||||||| | || |||||| |||| || ||| | |||| |||||
Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250
Query 39632 CCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCG 39691
| ||| ||||||||||| |||||| | | |||||||||||||||||| |||
Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190
Query 39692 AGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTGACG 39751
|||||||||||||||| ||| | || |||| || |||||||| |||| |||| |
Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130
Query 39752 GTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTGGAC 39811
|||||||| ||||||| | | ||| | | |||| || || ||| | |||
Sbjct 129 ACCGCGCCGTCCTGAGGACGGCGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGAC 70
Query 39812 ATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGA 39860
||||| || || ||||||||||||||| ||| || ||| || ||||
Sbjct 69 ATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTCAGCCCCTCGA 21
>seq3903
Length=451
Score = 98.7 bits (108), Expect = 3e-16
Identities = 260/390 (67%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 40763 ACGTAGTGGCTGTCGTTGGTGACCACCGGGGTGAGCGC-GAGGTGCTTGCCCAGCCGGTA 40821
||||||||| |||||| || | || | || | |||| || | || | || ||
Sbjct 5 ACGTAGTGGAGGTCGTTCGTCGCGAC-GAGGCGCGCGCCGATGGTCTCCGCGAGGCGCAG 63
Query 40822 GAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTA 40881
|||||| | ||| ||| |||||| || | ||||||||||||| ||| | |||| |
Sbjct 64 GAGGTCCTTCGTGACCCGCGTCTCGATGTCGATCCCGTGGTCCATGAGCTCGACGAAGAA 123
Query 40882 CCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCC-TCCGCAACGGCCTGGTCGTACT 40940
|| || ||||| | ||| || | ||| ||| ||||| || |||| ||| |||
Sbjct 124 GTTCTCGCGGCCGAAGATGTCCTGGAGCTCGCCCGCCGTCCGC-ACCGCCTCGTCCCACT 182
Query 40941 GCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGC 41000
| |||||| || || ||| |||| | || ||||| || | || ||| ||||
Sbjct 183 GTCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTCGTCGCGACGAGGC 242
Query 41001 CCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCT 41060
||| | || | || ||||||| |||||||||||| |||| || | | | ||||
Sbjct 243 CCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTGCCCATCTGCCCCT 302
Query 41061 CTTGGTACGACCGAGAGCTGA--GCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGC 41118
| | ||| |||| | || | | ||||||||||| || |||| || ||
Sbjct 303 CGAGCGACG--CGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCTCGTTGTCCTTCGC 360
Query 41119 GAGGATCGTGAGGTGGGTGTACGCACCGCG 41148
||| | ||| | ||| ||||||||||||||
Sbjct 361 GAGCAGCGTCATGTGCGTGTACGCACCGCG 390
>seq4505
Length=425
Score = 93.3 bits (102), Expect = 1e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC-CGGTCATCGAAGTCGA 40181
|||| || ||||| ||||| | |||||||||| |||| ||| | | | |||| |||||
Sbjct 64 CCCGAACGTCTCGTAGACGTGCTGGATGACCTCCTCGCGCCGCGCCGAC-TCGATGTCGA 122
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
|||| | ||| ||| | ||||||||||| ||||| |||||||| | || ||||
Sbjct 123 TGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCGAGGAAGCGCTCGAACAGCAGGCCGT 182
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
||| || | |||| | | ||||| ||||| |||| |||| || || ||||
Sbjct 183 GCTTCACCGCGTCGACGGCCGTGATGCCGAGCGCGTAGCAGACCGCGGAGTTCGCGGCCG 242
Query 40302 AGCCTCGCCC 40311
|||| |||||
Sbjct 243 AGCCGCGCCC 252
>seq2881
Length=589
Score = 86.0 bits (94), Expect = 2e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 38497 CTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38556
||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 162 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 103
Query 38557 GAGAAGCGGACCCTTCGCCCAGTCC 38581
||| || | ||| ||||||||
Sbjct 102 GAGGCGCTGCTTCTTGTCCCAGTCC 78
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160392089042262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |