Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3505 379 7e-101 seq3261 242 1e-59 seq6680 188 2e-43 seq3903 98.7 3e-16 seq4505 93.3 1e-14 seq2881 86.0 2e-12 >seq3505 Length=1005 Score = 379 bits (420), Expect = 7e-101 Identities = 484/655 (74%), Gaps = 15/655 (2%) Strand=Plus/Minus Query 38707 CGAGTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCGCGCTTGCT---CACGGTGGC 38763 ||||||||||||||| |||||||| | |||||||||| ||||||| | ||| ||| Sbjct 870 CGAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTTGCACACCACGGC 811 Query 38764 CTGAGTCGCTGCCTTCAAGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAG 38823 | | | || | | |||||| | | || |||||| ||| | || ||| | Sbjct 810 CGGCACCT-TGTCG--AGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGC-G 755 Query 38824 TTCGGC-GATCTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGC 38882 | ||| |||| || |||| | | | |||| ||||| |||| | || || ||||||| Sbjct 754 TGCGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGC 695 Query 38883 GGATCTCGCTCTCCCCGTTCGGGGTGAAGGA-GCTGTTCGAGACCGACACGTCGGGCGGC 38941 |||| |||| || | || |||||| || | |||| | |||||| ||||| Sbjct 694 GGATGTCGCCGCCCAC---CGCGGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGG 639 Query 38942 AGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCG 39001 || || | | ||||||||| |||| |||||| ||||| ||||| ||||||| Sbjct 638 AGCACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCG 579 Query 39002 TCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 39060 |||| ||| | || || | |||||||||||||| | |||||||| || ||| ||| | Sbjct 578 TCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAA 520 Query 39061 CGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39120 |||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || Sbjct 519 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 460 Query 39121 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC 39180 ||||| || || ||| |||||| ||||||||||| ||| ||| ||||| || ||||| Sbjct 459 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 400 Query 39181 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39240 || ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 399 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 340 Query 39241 CATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGC 39300 ||| || || ||||||||||||||||| || || ||| || |||||||||||||| || Sbjct 339 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 280 Query 39301 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCC 39355 | |||| |||||||||||||||| |||||| ||||| ||| ||| ||||||||| Sbjct 279 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCC 225 Score = 158 bits (174), Expect = 4e-34 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 39333 CGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGA 39392 |||| ||| ||| ||||||||| ||||||| ||| | ||| ||||| || ||| || Sbjct 189 CGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGA 130 Query 39393 TCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGAC 39452 || |||| | || ||||| || || || ||||||||||| ||| | ||||||||| | Sbjct 129 TCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGC 70 Query 39453 CCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGC 39512 |||| ||||||||||||| ||||||||||| ||| ||||| ||||| ||||||| | ||| Sbjct 69 CCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGC 10 Query 39513 GGAGCAG 39519 | || || Sbjct 9 GCAGGAG 3 >seq3261 Length=292 Score = 242 bits (268), Expect = 1e-59 Identities = 229/292 (78%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 40012 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 40071 ||| |||||||| || | | |||||| | | || | || |||| |||||| | ||| Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233 Query 40072 GTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTT 40131 | |||||||| |||| |||| ||||||| ||||| |||| | |||||||| Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173 Query 40132 CTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTC 40191 ||| |||||||||||||||||||| ||||| || || || |||||||||| ||| ||||| Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113 Query 40192 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGG 40251 |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53 Query 40252 ATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303 ||||| |||||||| || | | ||||| | ||| || || || |||||| Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1 >seq6680 Length=369 Score = 188 bits (208), Expect = 2e-43 Identities = 251/349 (72%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 39512 CGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTG 39571 || || || | |||||| | |||||||||||||||||||| |||||||||||| Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310 Query 39572 GCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCC 39631 || ||||||||||| | || |||||| |||| || ||| | |||| ||||| Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250 Query 39632 CCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCG 39691 | ||| ||||||||||| |||||| | | |||||||||||||||||| ||| Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190 Query 39692 AGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTGACG 39751 |||||||||||||||| ||| | || |||| || |||||||| |||| |||| | Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130 Query 39752 GTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTGGAC 39811 |||||||| ||||||| | | ||| | | |||| || || ||| | ||| Sbjct 129 ACCGCGCCGTCCTGAGGACGGCGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGAC 70 Query 39812 ATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGA 39860 ||||| || || ||||||||||||||| ||| || ||| || |||| Sbjct 69 ATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTCAGCCCCTCGA 21 >seq3903 Length=451 Score = 98.7 bits (108), Expect = 3e-16 Identities = 260/390 (67%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 40763 ACGTAGTGGCTGTCGTTGGTGACCACCGGGGTGAGCGC-GAGGTGCTTGCCCAGCCGGTA 40821 ||||||||| |||||| || | || | || | |||| || | || | || || Sbjct 5 ACGTAGTGGAGGTCGTTCGTCGCGAC-GAGGCGCGCGCCGATGGTCTCCGCGAGGCGCAG 63 Query 40822 GAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTA 40881 |||||| | ||| ||| |||||| || | ||||||||||||| ||| | |||| | Sbjct 64 GAGGTCCTTCGTGACCCGCGTCTCGATGTCGATCCCGTGGTCCATGAGCTCGACGAAGAA 123 Query 40882 CCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCC-TCCGCAACGGCCTGGTCGTACT 40940 || || ||||| | ||| || | ||| ||| ||||| || |||| ||| ||| Sbjct 124 GTTCTCGCGGCCGAAGATGTCCTGGAGCTCGCCCGCCGTCCGC-ACCGCCTCGTCCCACT 182 Query 40941 GCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGC 41000 | |||||| || || ||| |||| | || ||||| || | || ||| |||| Sbjct 183 GTCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTCGTCGCGACGAGGC 242 Query 41001 CCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCAGGCCCT 41060 ||| | || | || ||||||| |||||||||||| |||| || | | | |||| Sbjct 243 CCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTGCCCATCTGCCCCT 302 Query 41061 CTTGGTACGACCGAGAGCTGA--GCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGC 41118 | | ||| |||| | || | | ||||||||||| || |||| || || Sbjct 303 CGAGCGACG--CGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCTCGTTGTCCTTCGC 360 Query 41119 GAGGATCGTGAGGTGGGTGTACGCACCGCG 41148 ||| | ||| | ||| |||||||||||||| Sbjct 361 GAGCAGCGTCATGTGCGTGTACGCACCGCG 390 >seq4505 Length=425 Score = 93.3 bits (102), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC-CGGTCATCGAAGTCGA 40181 |||| || ||||| ||||| | |||||||||| |||| ||| | | | |||| ||||| Sbjct 64 CCCGAACGTCTCGTAGACGTGCTGGATGACCTCCTCGCGCCGCGCCGAC-TCGATGTCGA 122 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 |||| | ||| ||| | ||||||||||| ||||| |||||||| | || |||| Sbjct 123 TGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCGAGGAAGCGCTCGAACAGCAGGCCGT 182 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 ||| || | |||| | | ||||| ||||| |||| |||| || || |||| Sbjct 183 GCTTCACCGCGTCGACGGCCGTGATGCCGAGCGCGTAGCAGACCGCGGAGTTCGCGGCCG 242 Query 40302 AGCCTCGCCC 40311 |||| ||||| Sbjct 243 AGCCGCGCCC 252 >seq2881 Length=589 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38497 CTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38556 ||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 162 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 103 Query 38557 GAGAAGCGGACCCTTCGCCCAGTCC 38581 ||| || | ||| |||||||| Sbjct 102 GAGGCGCTGCTTCTTGTCCCAGTCC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160392089042262