Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3505 378 2e-100 seq6680 237 5e-58 seq3261 197 4e-46 seq3903 109 2e-19 >seq3505 Length=1005 Score = 378 bits (418), Expect = 2e-100 Identities = 482/658 (73%), Gaps = 13/658 (2%) Strand=Plus/Minus Query 37615 GAGTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCT---CACGTTCGCC 37671 |||||||||||||| |||||||| | ||||||| || |||||| | ||| ||| Sbjct 869 GAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTTGCACACCACGGCC 810 Query 37672 TGAGTCGCCGACCGAAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGT 37731 | | || |||||||| | | || |||||| ||| | || ||| Sbjct 809 GG---CACCTTGTCGAGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGCGTG 753 Query 37732 TGGACGATCTCATCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGG 37791 ||| |||| | ||||| | | | |||| ||||| |||| | || || ||||||||| Sbjct 752 CGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGG 693 Query 37792 ATCTC-CCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAG 37850 || || |||| | ||| |||||| | |||| | |||||| ||||| || Sbjct 692 ATGTCGCCGCCCACCGC----GGTGAACTTCGCCGCCGAGTCGTTCACGTCCGGCGGGAG 637 Query 37851 GACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTC 37910 || | | |||||||| ||||||| |||||| ||||| ||||| ||||||||| Sbjct 636 CACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTC 577 Query 37911 GCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACG 37969 || ||| | || || | |||||||||||||| | |||||||| || ||| ||| ||| Sbjct 576 GCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACG 518 Query 37970 CCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGG 38029 |||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || | Sbjct 517 CCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCG 458 Query 38030 CGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGC 38089 |||| || || ||| |||||| |||||| |||| || || || ||||| || ||||| | Sbjct 457 CGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTCCC 398 Query 38090 TCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCA 38149 ||| |||||| ||||||||||||| | || | ||| |||||||||||||| Sbjct 397 GGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCCCA 338 Query 38150 TGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCT 38209 | ||||| || || ||||||||||| ||||| | ||||||||| ||||||||||| ||| Sbjct 337 TCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGCCC 278 Query 38210 TCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAG 38267 |||| |||||||||||||||| |||||| ||| ||||| ||| |||||||| || || Sbjct 277 TCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 220 Score = 197 bits (218), Expect = 4e-46 Identities = 156/187 (83%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 38240 CGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGA 38299 || ||||| ||| |||||||| || || |||| ||| | ||| |||||||| ||| || Sbjct 189 CGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGA 130 Query 38300 TCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGAC 38359 ||| |||| | ||||||||||| || |||||||||||||||||| |||||||||||| | Sbjct 129 TCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGC 70 Query 38360 CCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGC 38419 |||| ||||||||||||| ||||||||||| ||| ||||||| ||||||||||| | ||| Sbjct 69 CCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGC 10 Query 38420 GAAGCAG 38426 | || || Sbjct 9 GCAGGAG 3 >seq6680 Length=369 Score = 237 bits (262), Expect = 5e-58 Identities = 275/368 (75%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 38419 CGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTG 38478 || || || | |||||| | |||||||||||||||||| || ||| ||||| || | Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310 Query 38479 GCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGTGCTCA 38538 || ||||||||||| | ||| |||||| |||| || |||||| |||| |||| Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250 Query 38539 CCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCG 38598 | ||| ||||||||||| ||||||| | | ||||||||||||||| |||||| Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190 Query 38599 AGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATC 38658 |||||||||||||| | ||||| ||| ||||| | |||||||||||||||| ||||| Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130 Query 38659 GTCACGCCGTCCGCAGGCCGCACCCACG-TAGGGATGTGGTCGACCAGCGGCTCGTCAGA 38717 | |||||||| ||| || | || | | |||||| ||||| ||||| ||| || Sbjct 129 ACCGCGCCGTCCTGAGGACGG-CGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGA 71 Query 38718 CATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCGC 38777 |||||| || || || |||||||||||| |||||| || || |||| || ||||| Sbjct 70 CATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTCAGCCCCTCGATACCCCGCGC 11 Query 38778 GAGGTCGA 38785 ||| |||| Sbjct 10 GAGCTCGA 3 >seq3261 Length=292 Score = 197 bits (218), Expect = 4e-46 Identities = 219/292 (75%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 38919 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 38978 ||| |||||||| || | | |||||| | | || | || |||| |||||| | ||| Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233 Query 38979 GTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTT 39038 | |||||||| ||||| || ||||||| ||||| ||| ||||||||| Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173 Query 39039 CTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTC 39098 ||| |||||||||||||| || || || || ||||| || |||||||||| ||| ||||| Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113 Query 39099 GGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39158 |||||| || |||||||| ||||| ||||||||||||||||| |||||||| | || Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53 Query 39159 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAG 39210 ||| || |||||||| || | | ||| | ||||| ||||| || || ||| Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1 >seq3903 Length=451 Score = 109 bits (120), Expect = 2e-19 Identities = 232/341 (68%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 39719 CGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCT 39778 ||||||| |||||| | ||| ||| |||||| || | ||||||||||||| || Sbjct 54 CGAGGCGCAGGAGGTCCTTCGTGACCCGCGTCTCGATGTCGATCCCGTGGTCCATGAGCT 113 Query 39779 CCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCGGCC-TCGGCGACGGCC 39837 | | ||||||||| || |||||||| ||| | || | ||| || || || ||| Sbjct 114 CGACGAAGAAGTTCTCGCGGCCGAAGATGTCCTGGAGCTCGCCCGCCGTCCGC-ACCGCC 172 Query 39838 TCCTCGTACTGGCCGAGGTTGAGCCGGGTC---ATCACTGCGCCACCGGGGCATCCCGTG 39894 || || |||| |||||| || || ||| ||| | || | || ||||| || | Sbjct 173 TCGTCCCACTGTCCGAGGCGCAGGCGCGTCTGGATCTC-GCCCGAC--GGGCACCCGCTC 229 Query 39895 GTGCCGATCAGGCCCTCTGCGTGCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTC 39954 || ||| ||||||| ||| | | | || ||| |||||||||||| |||| Sbjct 230 GTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTG 289 Query 39955 CCGAGCAGGCCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTC 40014 || | | | |||||| ||| | | || || | ||||||||||||||| || Sbjct 290 CCCATCTGCCCCTCGAGCGACGCGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCTCG 349 Query 40015 TTGTTCGTGGCGAGCATGGTCATGTGGGTGTAGGCACCCCG 40055 |||| | | ||||||| |||||||| ||||| ||||| || Sbjct 350 TTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCG 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159700950708966