Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq3505 392 1e-104 seq6680 233 6e-57 seq3261 206 9e-49 seq3903 111 5e-20 >seq3505 Length=1005 Score = 392 bits (434), Expect = 1e-104 Identities = 485/658 (74%), Gaps = 13/658 (2%) Strand=Plus/Minus Query 38048 GAGTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCT---CACGTTCGCC 38104 |||||||||||||| |||||||| | ||||||| || |||||| | ||| ||| Sbjct 869 GAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTTGCACACCACGGCC 810 Query 38105 TGAGTCGCCGACCGGAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGT 38164 | | || ||||||||| | | || |||||| ||| | || ||| Sbjct 809 GG---CACCTTGTCGAGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGCGTG 753 Query 38165 TGGACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGG 38224 ||| |||| | ||||| | | || |||| ||||| |||| | || || ||||||||| Sbjct 752 CGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGCGG 693 Query 38225 ATCTC-CCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGGCAG 38283 || || |||| | ||| |||||| | |||| | |||||| ||||| || Sbjct 692 ATGTCGCCGCCCACCGC----GGTGAACTTCGCCGCCGAGTCGTTCACGTCCGGCGGGAG 637 Query 38284 GACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTC 38343 || | | |||||||| ||||||| |||||| ||||| ||||| ||||||||| Sbjct 636 CACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTCGTC 577 Query 38344 GCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACG 38402 || ||| | || || | |||||||||||||| | |||||||| || ||| ||| ||| Sbjct 576 GCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGAACG 518 Query 38403 CCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGG 38462 |||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || | Sbjct 517 CCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCCCG 458 Query 38463 CGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTCGC 38522 |||| || || ||| |||||| |||||| |||| || ||||| ||||| || ||||| | Sbjct 457 CGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTCCC 398 Query 38523 TTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCA 38582 ||| |||||| ||||||||||||| | || | ||| |||||||||||||| Sbjct 397 GGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCCCA 338 Query 38583 TGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCT 38642 | ||||| || || ||||||||||| ||||| | ||||||||| ||||||||||| ||| Sbjct 337 TCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGCCC 278 Query 38643 TCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAG 38700 |||| |||||||||||||||| |||||| ||| ||||| ||| |||||||| || || Sbjct 277 TCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 220 Score = 194 bits (214), Expect = 5e-45 Identities = 155/187 (83%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 38673 CGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGA 38732 || ||||| ||| |||||||| || || |||| ||| | ||| |||||||| ||| || Sbjct 189 CGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGA 130 Query 38733 TCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGAC 38792 ||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||| | Sbjct 129 TCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGC 70 Query 38793 CCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGC 38852 |||| ||||||||||| | |||||| |||| ||| ||||||| ||||||||||| | ||| Sbjct 69 CCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGC 10 Query 38853 GGAGCAG 38859 | || || Sbjct 9 GCAGGAG 3 >seq6680 Length=369 Score = 233 bits (258), Expect = 6e-57 Identities = 273/366 (75%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 38852 CGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTG 38911 || || || | |||||| | ||||||||||||||||||||| ||||||||| || | Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310 Query 38912 GCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGACGTGCTCA 38971 || ||||||||||||| ||| ||| || |||| || |||||| |||| |||| Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250 Query 38972 CCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCG 39031 | ||| ||||||||||| ||||||| | | ||||||||||||||| |||||| Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190 Query 39032 AGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATC 39091 |||||||||||||| | ||||| || ||||| | |||||||||||||||| ||||| Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130 Query 39092 GTTACGCCGTCCGCAGGCCGCACCCACG-TCGGGATGTGATCGACCAGCGGCTCGTCGGA 39150 |||||||| ||| || | || | |||||||| |||| ||||| ||| || Sbjct 129 ACCGCGCCGTCCTGAGGACGG-CGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGA 71 Query 39151 CATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGCGC 39210 |||||| || || || |||||||||||| |||||| || || |||| || ||||| Sbjct 70 CATGATGACGCCCGCCGCGTGCACGCCCCACTGCCGCTTCAGCCCCTCGATACCCCGCGC 11 Query 39211 GAGGTC 39216 ||| || Sbjct 10 GAGCTC 5 >seq3261 Length=292 Score = 206 bits (228), Expect = 9e-49 Identities = 221/292 (76%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 39352 GGTCAGCTTCTCGCCGACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 39411 ||| |||||||| || | | ||||| | | || | || |||| |||||| | ||| Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233 Query 39412 GTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTT 39471 | ||||||||| ||||||| || ||||||| ||||| |||| ||||||||| Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173 Query 39472 CTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTC 39531 ||| |||||||||||||| || || || || ||||| || |||||||||| ||| ||||| Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113 Query 39532 GGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39591 |||||| || || ||||| ||||| ||||||||||||||||| |||||||| | || Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53 Query 39592 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAG 39643 ||| || |||||||| || | | ||| | ||||| ||||| || || ||| Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1 >seq3903 Length=451 Score = 111 bits (122), Expect = 5e-20 Identities = 235/344 (68%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 40152 CGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCT 40211 ||||||| |||||| | ||| ||| |||||| || | ||||||||||||| || Sbjct 54 CGAGGCGCAGGAGGTCCTTCGTGACCCGCGTCTCGATGTCGATCCCGTGGTCCATGAGCT 113 Query 40212 CCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCAGCC-TCGGCGACGGCC 40270 | | ||||||||| || |||||||| ||| | || | ||| || || || ||| Sbjct 114 CGACGAAGAAGTTCTCGCGGCCGAAGATGTCCTGGAGCTCGCCCGCCGTCCGC-ACCGCC 172 Query 40271 TCCTCGTACTGACCGAGGTTGAGCCGGGTC---ATCACAGCACCACCGGGGCATCCCGTG 40327 || || |||| |||||| || || ||| ||| | || | || ||||| || | Sbjct 173 TCGTCCCACTGTCCGAGGCGCAGGCGCGTCTGGATCTC-GCCCGAC--GGGCACCCGCTC 229 Query 40328 GTGCCGATCAGGCCCTCTGCGT---GCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTAC 40384 || ||| ||||||| ||| ||| | | || ||| |||||||||||| || Sbjct 230 GTCGCGACGAGGCCCTTGCCGTACCGCTGG---AGGAGGTCGCGGTCCATGCGCGGCCAC 286 Query 40385 TTCCCGAGCAGACCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCG 40444 || || | | | |||||| ||| | | || || | ||||||||||||||| || Sbjct 287 TTGCCCATCTGCCCCTCGAGCGACGCGAGCGACGACGCCCGGAACAGGTTGTGCAGACCC 346 Query 40445 GTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCG 40488 |||| | ||||||||| |||||||| ||||| ||||| || Sbjct 347 TCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCG 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160225703887950