Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq4988 300 8e-77 seq4563 123 1e-23 seq4010 122 4e-23 seq4583 111 8e-20 >seq4988 Length=476 Score = 300 bits (332), Expect = 8e-77 Identities = 352/475 (74%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 65912 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 65971 ||||||||| |||||| | || ||||| |||||||||||| |||||| || ||| ||| Sbjct 5 CATCGACGCCGAGCACGCACTCGACCCGGAGTACGCCAAGAAGCTCGGCGTCGACACCGA 64 Query 65972 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66031 | ||| | || ||||||||||| || |||||||| || |||||| ||| | || Sbjct 65 CGCCCTGCTCGTCTCCCAGCCGGACACGGGGGAGCAGGCGCTCGAGATCACGGACATGCT 124 Query 66032 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66091 || || |||| ||| |||| ||||| | ||||| || |||||||| ||||| Sbjct 125 GATCCGCTCGGGCGCGCTCGACATCATCGTCATCGACTCCGTCGCGGCCCTCGTGCCCAA 184 Query 66092 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66151 || ||| |||| ||||| || || ||||| |||||||| || || || ||||||||||| Sbjct 185 GGCGGAGATCGAGGGCGAGATGGGCGACAGCCACGTCGGTCTCCAGGCCCGCCTCATGTC 244 Query 66152 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGT 66211 |||||| |||||||| ||||||| | || | || |||| | ||| | Sbjct 245 GCAGGCGCTGCGCAAGATCACCGGTGCGCTCAGCGCGTCCGGCACGACCGCCATCTTCAT 304 Query 66212 CAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGG 66271 ||||||| | |||||||||||||| |||| || |||| | |||||| || || || Sbjct 305 CAACCAGCTCCGCGAGAAGATCGG---CGTGTTCTTCGGCTCTCCCGAGACGACGACCGG 361 Query 66272 CGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA 66331 |||||||| ||| |||||||||||| ||||| | || |||| ||||||| ||| Sbjct 362 TGGCAAGGCGCTGAAGTTCTACGCCTCGGTCCGTCTCGACATCCGCCGCATCGAGACCCT 421 Query 66332 GAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 66386 ||||| ||| || || ||||||||||| ||||| |||||||||||||||||| Sbjct 422 CAAGGAGGGCACCGACGCGGTCGGCAACCGGACCCGCGTGAAGGTCGTCAAGAAC 476 >seq4563 Length=284 Score = 123 bits (136), Expect = 1e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 66348 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66407 || ||||||||||| ||||| ||||||||||||||||||||| |||| |||||| | Sbjct 282 GCGGTCGGCAACCGGACCCGCGTGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAG 223 Query 66408 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 66467 | ||||||||| | || | ||||||| |||||||| || |||| | ||| ||||| Sbjct 222 CAGGCCGAGTTCGACATCCTCTACGGGGTCGGCATCTCCCGCGAGGGTGGCCTCATCGAC 163 Query 66468 CTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAG 66527 ||| |||| ||| || | ||| ||||| || | ||||||| ||||| | | | Sbjct 162 ATGGGCGTGGAGCACGGGTTCGTGCGCAAGTCCGGGTCGTGGTTCACCTACGGCGGCGAC 103 Query 66528 AACGTCGCCCAGGGCAAG 66545 | ||| ||||||||| Sbjct 102 CAGCTCGGGCAGGGCAAG 85 >seq4010 Length=1045 Score = 122 bits (134), Expect = 4e-23 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 49100 CCACCCCAGGACCTAGCCGCCGAG-TCAGCAGTCCTCGGCGCCATGCTTCTCTCCAAGAA 49158 || ||||||||| | ||||||||| | ||| || ||||||| |||||| || || ||| | Sbjct 538 CCGCCCCAGGACGTCGCCGCCGAGATGAGC-GTGCTCGGCGGCATGCTGCTGTCGAAGGA 480 Query 49159 CGCCACCCCGGCCGTCATGGAG---ATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 49215 ||||| | ||| |||||| ||| || | | |||| |||||||||||| || Sbjct 479 CGCCATCGCGGACGTCATCGAGCAGATCCGCGGCTCCGA---CTTCTACCGCCCGGCGCA 423 Query 49216 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCCGGTGAGTCCGCCGACGTCAT 49275 || | ||||||| || |||| |||||||||| ||| ||| ||||||||| || Sbjct 422 CGAGATCGTCTACGAGTCGATCATCGACCTCTACGGTCGCGGCGAGCCCGCCGACGCGAT 363 Query 49276 CACCGTCGCCGCGGAGCT 49293 |||||||| ||||||||| Sbjct 362 CACCGTCGTCGCGGAGCT 345 >seq4583 Length=233 Score = 111 bits (122), Expect = 8e-20 Identities = 157/220 (71%), Gaps = 13/220 (6%) Strand=Plus/Minus Query 59194 GGCCGTCGCCAACTTCACCGTCGTGTCCAACGAACGCCGCCG-----CGACGCCCAGGGC 59248 ||| || ||||||||||| || | ||||| |||||| | |||| |||| Sbjct 215 GGCGGTGGCCAACTTCACGGTGGCGTCCA-----CGCCGCGGACCTTCGACCGCCAGTCG 161 Query 59249 AAC---TGGGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCC 59305 ||| ||| ||||| ||| || ||| | |||||| | ||||||||||| ||||| Sbjct 160 AACGAGTGGAAGGACGGGGACACCCTGTTCATGCGCTGCTCGATCTGGCGCGAGGCCGCG 101 Query 59306 GAGAACGTAGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAG 59365 |||||||| ||||| || ||| ||| ||||||||||||||| ||| |||| Sbjct 100 GAGAACGTCGCGGAGTCGCTGACGAAGGGCATGCGCGTCATCGTGCAGGGCCGCCTCGTC 41 Query 59366 CAGCGCTCCTTCGAGACCAAGGAAGGCGACAAGCGCACCG 59405 |||||||| | ||||||| || || || |||||||||| Sbjct 40 CAGCGCTCGTACGAGACCCGCGAGGGGGAGAAGCGCACCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242400202668701