Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177865.1_202017-04- 25] 7,513 sequences; 13,166,602 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3505 338 2e-88 seq3261 203 1e-47 seq6680 190 7e-44 seq6084 102 3e-17 seq2881 82.4 2e-11 >seq3505 Length=1005 Score = 338 bits (374), Expect = 2e-88 Identities = 480/661 (73%), Gaps = 17/661 (3%) Strand=Plus/Minus Query 38699 CGAGTCGAAGGCACCGGCCTTGATCAAGGACTCGATGGCACGCTTGCTCACGGTCGCCTG 38758 ||||||||| ||||| |||||||| | |||||||||| |||||| | | | || Sbjct 870 CGAGTCGAACGCACCTGCCTTGATGAGCGACTCGATGGTGCGCTTGTT---GCACACCAC 814 Query 38759 AGTCGCAGCCTTC---AGGAAGTCCGGCAGGGAAGTGAACTTCCCCCAGGCTTCCCGGAG 38815 | || |||| |||||||| | | || |||||| ||| | || || | Sbjct 813 GGCCGGCACCTTGTCGAGGAAGTCGGTGAACGACGTGAACGCGCCCTTCTCCTCGCGC-G 755 Query 38816 TTCGGC-GATCTCCTGGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGC 38874 | ||| |||| | | ||| | | | |||| ||||| |||| | || || ||||||| Sbjct 754 TGCGGATGATCGCGTCGACGACGTTCGCGCCGACGTTGCGCACGCCCGTGAGGCCGAAGC 695 Query 38875 GGATCTCCGTCTTCCCGTTCGGGGTGAAGGA-GCTGTTCGAGACCGACACGTCGGGCGGC 38933 |||| || | ||| || |||||| || | |||| | |||||| ||||| Sbjct 694 GGATGTCG--CCGCCCAC-CGCGGTGAACTTCGCCGC-CGAGTCGTTCACGTCCGGCGGG 639 Query 38934 AGGACG-TGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC 38992 || ||| ||| || | || ||||| |||| |||||| ||||| ||||| |||||| Sbjct 638 AGCACGGTGATGTGC-ATGCGCCGGCACTCGTTGAGGTAGAGGGCCAGCTTGTCCTTGTC 580 Query 38993 GTCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGT 39051 ||||| ||| | || || | |||||||||||||| | |||||||| || ||| ||| Sbjct 579 GTCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGTTCGCCTTGAGGA 521 Query 39052 ACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACC 39111 ||||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| | Sbjct 520 ACGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGC 461 Query 39112 CGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAGCCTCGCT 39171 | ||||| || || ||| |||||| ||||||||||| || |||| ||||| || |||| Sbjct 460 CCGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCT 401 Query 39172 CGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGC 39231 | || ||| |||||| ||||||||||||| | || | ||| ||||||||||| Sbjct 400 CCCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGC 341 Query 39232 CCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCG 39291 |||| || || || || ||||||||||| || || |||||| ||||||||||| || | Sbjct 340 CCATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGG 281 Query 39292 CCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAA 39351 || |||| |||||||||||||||| || || ||||||||| | |||||||| || | Sbjct 280 CCCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGA 221 Query 39352 G 39352 | Sbjct 220 G 220 Score = 176 bits (194), Expect = 1e-39 Identities = 151/187 (81%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 39325 CGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGA 39384 |||||||| | |||||||| || || |||| ||| | ||| |||||||| ||| || Sbjct 189 CGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGA 130 Query 39385 TCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCATCGGAC 39444 || |||| ||||||||||||| || |||||||||||||||||| || ||||||||| | Sbjct 129 TCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGC 70 Query 39445 CCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGC 39504 |||| ||||||||||||| |||||| || ||| ||||| ||||||||||||| | ||| Sbjct 69 CCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGC 10 Query 39505 GGAGCAG 39511 | || || Sbjct 9 GCAGGAG 3 >seq3261 Length=292 Score = 203 bits (224), Expect = 1e-47 Identities = 220/292 (75%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 40004 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGC 40063 ||| |||||||| || | | |||||| | | || | ||||||| |||||| | ||| Sbjct 292 GGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGC 233 Query 40064 GTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTT 40123 | |||||||| ||| |||| ||||||| ||||| ||| | |||||||| Sbjct 232 CTGCTTGGCCTTGATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTT 173 Query 40124 CTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTC 40183 ||| |||||||||| ||| || || || || || || || |||||||||| ||| ||||| Sbjct 172 CTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACGTCGACGTC 113 Query 40184 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGG 40243 |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| | || Sbjct 112 GGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCTCCAGCGG 53 Query 40244 GTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAG 40295 ||| || || |||||||| | | ||||| | ||| || || || |||||| Sbjct 52 GTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCCCGCGGCCGAG 1 >seq6680 Length=369 Score = 190 bits (210), Expect = 7e-44 Identities = 243/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 39504 CGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTG 39563 || || || | |||||| | |||||||||||||||||| || ||||||||| || | Sbjct 369 CGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGC 310 Query 39564 GCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCC 39623 || ||||||||||| | || |||||| |||| || ||| | |||| ||||| Sbjct 309 GCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCC 250 Query 39624 CCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCG 39683 | ||| ||||||||||| ||||||| | | ||||||||||||||| |||||| Sbjct 249 TTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCG 190 Query 39684 AGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACTGCGTCACG 39743 |||||||||||||| | ||| |||| |||| || |||||||| |||| || | | Sbjct 189 AGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTGGGTGATG 130 Query 39744 GTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGCTCGTTGGAC 39803 | |||||||| ||| ||| | | ||||| | |||| | ||| ||| | ||| Sbjct 129 ACCGCGCCGTCCTGAGGACGGCGCATGATCGGGATGATGTCGATGAGCGGGTCGCTCGAC 70 Query 39804 ATGATCACACCGGCCGCGTGAACGCCCATCTGCCG 39838 ||||| || || |||||||| |||||| |||||| Sbjct 69 ATGATGACGCCCGCCGCGTGCACGCCCCACTGCCG 35 >seq6084 Length=186 Score = 102 bits (112), Expect = 3e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39867 TCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCTCGCCCGCCTCG 39926 |||| ||| ||| || ||||||||| | |||| ||| ||||| ||| |||||||| Sbjct 16 TCGACGACGCGCTGCGCCTCCGGGTCGGTGTCGTGGAGCTGACGGAACTCCGCCGCCTCG 75 Query 39927 TCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGTTGCCCATCACG 39986 ||| ||| ||||| |||| |||||| ||| |||||| || |||||||||||| Sbjct 76 GAGTACCGCTCGTGCTTGGGGTCGAAGATCCCCGACAGGGGGATGTCCTTGCCCATCACG 135 Query 39987 TCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGG 40030 | | ||| ||||||||| |||||||| || | | |||||| Sbjct 136 GCCGGCGGCATCGCCTTGGTGAGCTTCTCCCCCATCGCGAAGGG 179 >seq2881 Length=589 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38489 CTCCAGCCCGGCAAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38548 ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 162 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 103 Query 38549 GAGAAGCGGACCCTTCGCCCAGTCC 38573 ||| || | ||| |||||||| Sbjct 102 GAGGCGCTGCTTCTTGTCCCAGTCC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160126512738264