Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177875.1_202017-04- 25] 23,151 sequences; 12,698,172 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7869 255 7e-63 seq5489 214 2e-50 seq4177 194 2e-44 >seq7869 Length=1564 Score = 255 bits (282), Expect = 7e-63 Identities = 699/1065 (66%), Gaps = 7/1065 (1%) Strand=Plus/Plus Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 |||||||| ||||| |||| ||||||| ||| ||||||| |||||||| |||| || Sbjct 342 ACTTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAA 401 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 ||| || |||||||||||| | || | ||| | ||| | | ||| | | || | Sbjct 402 CGAAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTT 461 Query 53901 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGT 53960 | || || || | |||| | ||||| | ||||| | |||||||||| Sbjct 462 TGAT---AGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGT 518 Query 53961 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 54020 | || || || | || |||||| | ||| | | || | ||| || | Sbjct 519 CACCGTAACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCAT 578 Query 54021 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 54080 || | || || ||||| || |||||||||||||| ||||| || | |||||| | Sbjct 579 TTTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTG 638 Query 54081 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 | | |||||| || || ||||| ||| ||| | || | | ||||||| || Sbjct 639 CACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCAT 698 Query 54141 GCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 54200 |||| ||||||| ||| | || | | ||||| | ||| || || ||||| || | | Sbjct 699 GCCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACAT 758 Query 54201 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 54260 | | || |||||||| |||| | | ||| ||||| | ||| || || | ||| || | Sbjct 759 AACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTG 818 Query 54261 TCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTG 54320 | || | || || ||| | | |||||| ||| || |||||| || || || | Sbjct 819 TACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAG 878 Query 54321 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 54380 | |||| || || || || ||| || || || || || || ||||| ||| || | Sbjct 879 CAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCT 938 Query 54381 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 54440 || ||||| || | ||||| |||||||| | ||| || ||||| || | Sbjct 939 CCTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACA 998 Query 54441 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTG 54500 | || ||||| ||||| ||||| ||||| ||| | | || ||||| || | ||| | Sbjct 999 ACGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAG 1058 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 || ||||| | || || |||| |||||| | ||| | | || || || | || Sbjct 1059 CCTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTT 1118 Query 54561 CAACGATCTTG-TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 | | | |||| ||| ||| | || || || || |||||||||||||||||||||| Sbjct 1119 CGGCCA-CTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAA 1177 Query 54620 TAGTTGTA-TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 || |||| |||||| |||| || || | ||| | ||||| | ||||||||| | || Sbjct 1178 TAACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTC 1236 Query 54679 GTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATT 54738 | || | || | | | || || || |||| | | || ||| | || ||| Sbjct 1237 CATGACAATATTGTAGACATCATCAGAGATCATGGGAGCAGGCTTACCAGTAGCAGCATT 1296 Query 54739 GACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAG 54798 ||| || || | | ||| | | || | | |||| ||||| | |||| ||| |||| Sbjct 1297 GACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAA 1356 Query 54799 ATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 ||| || | ||| ||||| || ||||| |||| ||||| ||||| Sbjct 1357 ATTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATG 1401 >seq5489 Length=2629 Score = 214 bits (236), Expect = 2e-50 Identities = 998/1567 (64%), Gaps = 43/1567 (3%) Strand=Plus/Minus Query 52798 CTTGTCCAATG-TGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 |||| ||||| | |||||||| | |||||| |||| || ||| | || |||||||| | Sbjct 1569 CTTGATCAATGGTAAATTGAATAGCAGCGGAGGCGGCTTGCGTTCTTAAGTAGTACATAC 1510 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTC 52915 | ||||||| ||| |||| ||||| ||||||||||| || | || || | Sbjct 1509 CAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTAGTAATCTTACCCATTGATG 1450 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 | ||| | | | ||||| || ||| ||||||||| || | | || ||| Sbjct 1449 GTGCTTGCAAGAAA-AGATTCAAGGAATGAGACTGATCGATGTAGATGGCACGATCAGCA 1391 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 53035 ||||| || || || |||||||| | |||||||| | ||||| || | | ||| | Sbjct 1390 GCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGACGGTTTTGTATAATTCCTTCAAT 1331 Query 53036 TCTTCTGGAAGGTTTG-TATTC--TGAATAGATCCACCATCTACCATAATCC--TATTCT 53090 |||| ||| | |||| || | |||||||| ||||| | |||| |||| | Sbjct 1330 TCTTGTGGCACATTTGGTAAGCCTTGAATAGA---ACCATTTTGTGTAATTAGATATTGT 1274 Query 53091 TG-ATCTCATCATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148 | || ||||| ||| ||| | ||| |||| | | || | || |||||||| Sbjct 1273 TTCATACTATCATCCCA-AATGCCCAGGTCGACTAAATCACGTAGTAAATATGGATTAAC 1215 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||| ||||| ||||||| || | |||| ||| || || ||| ||||| | Sbjct 1214 AACTTGGAATTCACCAGACAGGACACGACGAGAGTACATGTTTGAGGTCACTGGTTCGAA 1155 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 | ||||||| || | |||||| | |||||| || || ||||| ||||||| || Sbjct 1154 GCATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCCATAGTCAA 1095 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 | ||||| | || | | | || | | | ||| | |||||||| ||| | | Sbjct 1094 AGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAAGGTTTCCCAATCCCACATGCC 1035 Query 53329 CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC 53388 | ||| | | ||||| |||||| || || || ||| | Sbjct 1034 AAATGGTTTAGCGTTCCACATATCGAATTGTAAAATACCCTTGGAAGCTGGAGAACCTTC 975 Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 | | ||| ||| ||||| || | || | |||||| || || | | | | | Sbjct 974 AAAAGTAGAATATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAAGAGTAGCATG 915 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||| ||||||||||| | || |||||| ||| ||||| ||||| || Sbjct 914 GTAAATAGTTTCGAAGATTTGTTTGTTTAGAGTTTGAGCTTCTTCCGATTCAAAGGGTAG 855 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | || | ||| | | || || || || || ||||||| | | ||||||||||| | Sbjct 854 ACGCAACATCATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAGGTCTATGCTT 795 Query 53569 CTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | |||| || ||||| ||| || |||| ||||| |||||| || |||| | | || | Sbjct 794 CATATTTGA-ATTTCTAGCCTCGGGAACTGGATAGTAATTACGGTCGATAACTCTGTTCA 736 Query 53628 GGTTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------T 53677 ||| ||| ||| ||||| | | || | || | | |||| | | | Sbjct 735 AGTTG-TGAGTAATGACTTTAGCAATCTCGTGCAATCTCTCGAAATTATAGCTTGCAGTT 677 Query 53678 TGTCCATCTATTACAAAC-------ATGTTC--AATGCAATAGATGCCAGATTACAAACG 53728 | |||||| | || | ||| | | |||||||| || | ||||||||| Sbjct 676 TTACCATCTTCTGAAACCTCAACGAATGCTGGTAGGGCAATAGAAGCTAAATTACAAACT 617 Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788 || |||| || | ||||| | || ||| || | |||| | ||||| Sbjct 616 GCAGTTTCATCAGGGGAGGAATATTCGACGATTTCACAACATAAATTAGATGATTTGATA 557 Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848 || ||||| || ||||| || |||| ||||||| || |||||||||| ||||| || Sbjct 556 GTACCTAAGTTCTGTTGGTTTGTCTTCCTGTTACATGCGTCCTTATAAACCATGAAAGGT 497 Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908 ||||| ||||| |||| | || | ||| || | ||| | | || || ||| | Sbjct 496 GTACCTGTTTCTGTCTGTGCTTGCAAAATGGCATACCACAACTTTTGGGCTTTAATTGT- 438 Query 53909 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAA 53968 ||| | |||||||||||| | ||||| | | |||||| || || ||||| Sbjct 437 --TTTACCACGACCTTCTCTTTCGTAACGAGTATATAGTTCTTCAAATTCATCGCCCCAC 380 Query 53969 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 54028 |||| || || || || || || | | ||| | ||| || || || | Sbjct 379 ACATCATCTAAACCTGGGGCAGCACTGGGCGAAAACAAAGTCCAAGGCCCATCCTCTTGA 320 Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||||||| || || ||||| ||||| ||||| || | |||||| | | | | Sbjct 319 ACACGTTTCATGAAAAGGTCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCACGAATT 260 Query 54089 TCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || ||| || ||| | | ||||| || | | ||||| | |||||| || Sbjct 259 TCTTCCTTACCATGTGTT-TTTCTGATATCGACAAAGTCGAAGATATCTGCATGCCATGG 201 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 54207 |||||| | | || | | | ||||| | ||||| || ||||| || | || | || Sbjct 200 CTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTGTTACCACCCTGGTCCACATAACGGGC 141 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 |||||||| |||| | | ||| ||||| | || || || | ||| ||||| || | Sbjct 140 AGTGTTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTACCAGC 81 Query 54268 GATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATCCCCCCTGCCATTT 54326 |||||| || ||| ||| || || | || ||| ||||| | || ||||| ||| Sbjct 80 GATATAAGAACCTGTGGAACGGATGTTGTTGATATGA-AGACCAACACCACCTGCAGTTT 22 Query 54327 TAGAGAT 54333 | || || Sbjct 21 TGGAAAT 15 >seq4177 Length=3506 Score = 194 bits (214), Expect = 2e-44 Identities = 589/900 (65%), Gaps = 15/900 (2%) Strand=Plus/Minus Query 23824 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 23883 |||| |||||||| || |||||||| ||| || | |||||||| || ||||| | Sbjct 3394 CTTG-GACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCT 3336 Query 23884 TACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCT 23941 |||| | || || || ||||||||||||||| | || || || || ||| |||| Sbjct 3335 TACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT 3276 Query 23942 TTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT 24001 | | | || || | | || ||| || ||||| ||||| | ||| ||||| | Sbjct 3275 TGTTA--CCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAA 3218 Query 24002 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT-TCTT-GTTCA 24059 ||| ||||| |||| | |||||| | || | ||||| | |||| ||||| Sbjct 3217 GTCAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCA 3160 Query 24060 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAA 24119 || || || || || | ||| | || | || ||| | | ||| Sbjct 3159 ATTTCCACAGCCTCGGTGACAATTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAA 3100 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || |||| ||| ||||| || ||| ||| | ||| |||||||||| || |||||| Sbjct 3099 TGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCG 3040 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| || | |||||||| | || | |||||| | ||| || ||||| ||||| Sbjct 3039 TTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAG 2980 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || || || | ||||| | | |||||||||| |||||||| ||| | | Sbjct 2979 GAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAG 2920 Query 24300 GCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 ||| ||| || ||||| || |||||| |||||||||| | || || Sbjct 2919 GCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATG 2860 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || | || ||||| || | | | |||| ||| || || | || ||||| ||| Sbjct 2859 GTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATC 2800 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 || | || |||| || ||||| |||||||| ||||| || |||||||||| Sbjct 2799 AACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTC 2740 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||||| | ||| || ||||| | | || ||| | || |||||||| || || Sbjct 2739 TTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATA 2680 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT-- 24593 |||||| || || ||||| || | || || ||| || | ||| ||| || Sbjct 2679 CCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTC 2620 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 || || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || Sbjct 2619 ATTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAA 2560 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || || || || || || | |||||| ||||| || | || || |||| |||| Sbjct 2559 GAAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 2500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593549784390480