Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177875.1_202017-04- 25] 23,151 sequences; 12,698,172 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7869 260 2e-64 seq5489 228 1e-54 seq4177 217 2e-51 >seq7869 Length=1564 Score = 260 bits (288), Expect = 2e-64 Identities = 698/1064 (66%), Gaps = 5/1064 (0%) Strand=Plus/Plus Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||||||| ||||| |||| ||||||| ||| ||||||| |||||||| |||| || Sbjct 342 ACTTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAA 401 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 ||| || |||||||||||| | |||| ||| | ||| | | ||| | | | || | Sbjct 402 CGAAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTT 461 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | || || || | | |||| | ||||| | ||||| | || ||||||| Sbjct 462 TGAT---AGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGT 518 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | || || || | || | |||| | ||| | | || | ||| || | Sbjct 519 CACCGTAACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCAT 578 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 || | || || ||||| || |||||||||||||| ||||| || | |||||||| Sbjct 579 TTTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTG 638 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 | | |||||| || || ||||| ||| ||| | || | | ||||||| || Sbjct 639 CACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCAT 698 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| ||||||| ||| | ||| | | ||||| | ||| || || ||||| || | | Sbjct 699 GCCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACAT 758 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 | | || |||||||| |||| | | ||| ||||| | |||||| || |||| || | Sbjct 759 AACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTG 818 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 |||| | || || ||| | | |||||| ||| || |||||| || || || | Sbjct 819 TACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAG 878 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | |||| || || || || ||| || || ||||| || || || || || || | Sbjct 879 CAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCT 938 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | ||||| || | ||||| |||||||| | | ||| || ||||| || | Sbjct 939 CCTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACA 998 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 | || ||||| ||||| ||||| ||||| ||| | | || ||||| || | ||| | Sbjct 999 ACGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAG 1058 Query 63739 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 || ||||| | || || |||| |||||| | ||| | | || || || | || Sbjct 1059 CCTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTT 1118 Query 63799 CAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63858 | | | || ||| ||| | | || || || ||||||||||||||||||||||| Sbjct 1119 CGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAAT 1178 Query 63859 AGTTGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTG 63917 | |||| |||||| |||| || || | ||| | || || | |||||||| | || Sbjct 1179 AACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCC 1237 Query 63918 TTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 63977 | || |||| | | | || || || |||| | | || ||| | || ||| Sbjct 1238 ATGACAATATTGTAGACATCATCAGAGATCATGGGAGCAGGCTTACCAGTAGCAGCATTG 1297 Query 63978 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGA 64037 || || | | | ||| || | || | | |||| ||||| | |||| || |||| | Sbjct 1298 ACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAA 1357 Query 64038 TTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || || ||||| |||||||| ||||| |||| ||||| ||||| Sbjct 1358 TTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATG 1401 >seq5489 Length=2629 Score = 228 bits (252), Expect = 1e-54 Identities = 1010/1572 (64%), Gaps = 53/1572 (3%) Strand=Plus/Minus Query 62036 CTTGTCCAATG-TGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 |||| ||||| | |||||||| | |||||| |||| || ||| | || |||||||| | Sbjct 1569 CTTGATCAATGGTAAATTGAATAGCAGCGGAGGCGGCTTGCGTTCTTAAGTAGTACATAC 1510 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTC 62153 | ||||||| ||| |||| ||||| ||||||||||| || | || || | Sbjct 1509 CAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTAGTAATCTTACCCATTGATG 1450 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 | ||| | | | ||||| || ||| ||||||||| || | | || ||| Sbjct 1449 GTGCTTGCAAGAAA-AGATTCAAGGAATGAGACTGATCGATGTAGATGGCACGATCAGCA 1391 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||| || || || |||||||| | |||||||| | ||||| || | | ||| | Sbjct 1390 GCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGACGGTTTTGTATAATTCCTTCAAT 1331 Query 62274 TCTTCTGGAAGGTTTG-TATTC--TGAATGGATCCACCATCTACCATAATCC--TATTCT 62328 |||| ||| | |||| || | ||||| || ||||| | |||| |||| | Sbjct 1330 TCTTGTGGCACATTTGGTAAGCCTTGAATAGA---ACCATTTTGTGTAATTAGATATTGT 1274 Query 62329 TG-ATCTCATCATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 | || ||||| ||| ||| | ||| |||| | | || | || || ||||| Sbjct 1273 TTCATACTATCATCCCA-AATGCCCAGGTCGACTAAATCACGTAGTAAATATGGATTAAC 1215 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||||||||||| ||||||| || | |||| ||| || || ||| ||||| | Sbjct 1214 AACTTGGAATTCACCAGACAGGACACGACGAGAGTACATGTTTGAGGTCACTGGTTCGAA 1155 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 | ||||||| || | |||||| | |||||| || || ||||| ||||||| || Sbjct 1154 GCATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCCATAGTCAA 1095 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT----AGATGTTCCCAATTCCAAA 62562 | ||||| | || ||||| | | | || ||| || | |||||||| ||| | Sbjct 1094 AGAGTTTCTTAACCC--ATGTT-TAACAATGTCCTTTCTTAAGGT-TTCCCAATCCCACA 1039 Query 62563 GATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATC 62622 | | ||| | | |||||| |||||| || || || | Sbjct 1038 TGCCAAATGGTTTAGCGTTCCACATATCGAATTGTAAAATACCCTTGGAAGCTGGAGAAC 979 Query 62623 CTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCAC 62682 || || | ||| |||| ||||| || | || | || ||| || || | | | Sbjct 978 CTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAAGAGTAG 919 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | | ||||| ||||| ||||| | || |||||| ||| ||||| ||||| | Sbjct 918 CATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGAGTTTGAGCTTCTTCCGATTCAAAGG 859 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | | || | ||| | | || || || || || ||||||| | | |||||||||| Sbjct 858 GTAGACGCAACATCATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAGGTCTAT 799 Query 62803 GTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 | || |||| || ||||| ||| || |||| ||||| |||||| || |||| | | Sbjct 798 GCTTCATATTTGA-ATTTCTAGCCTCGGGAACTGGATAGTAATTACGGTCGATAACTCTG 740 Query 62862 TTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC--GC 62918 || | | || ||| ||| ||||| | | || | || | | |||| | | | || Sbjct 739 TTCA-AGTTGTGAGTAATGACTTTAGCAATCTCGTGCAATCTCTCGAAATTATAGCTTGC 681 Query 62919 -------CCATCTATTACAAAC-------ATGTTC--AATGCAACAGATGCCAGATTACA 62962 |||||| | || | ||| | | |||| ||| || | |||||| Sbjct 680 AGTTTTACCATCTTCTGAAACCTCAACGAATGCTGGTAGGGCAATAGAAGCTAAATTACA 621 Query 62963 CACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 63022 || || |||| || | ||||| | || ||| || | |||| | || Sbjct 620 AACTGCAGTTTCATCAGGGGAGGAATATTCGACGATTTCACAACATAAATTAGATGATTT 561 Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 |||||| ||||| || ||||| || |||| ||||||| || |||||||||| ||||| Sbjct 560 GATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGTTACATGCGTCCTTATAAACCATGAA 501 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63142 || ||||| ||||| |||| | || | ||| || | ||| | | | || || || Sbjct 500 AGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGGCATACCACAACTTTTGGGCTTTAAT 441 Query 63143 TATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | | ||| | | |||||||||||| ||||||| | | ||| || || || || Sbjct 440 TGT---TTTACCACGACCTTCTCTTTCGTAACGAGTATATAGTTCTTCAAATTCATCGCC 384 Query 63203 CCAAACATTGTC-CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 ||| |||| || || || || || || || | | ||| | ||| || || | Sbjct 383 CCACACATCATCTAAACCTGGGGCA-GCACTGGGCGAAAACAAAGTCCAAGGCCCATCCT 325 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | | || |||||||| || || ||||| ||||| ||||| || | |||||||| | Sbjct 324 CTTGAACACGTTTCATGAAAAGGTCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCAC 265 Query 63322 TATGTTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63380 | ||| || || || ||| || ||| | | ||||| || | | ||||| | |||| Sbjct 264 GAATTTCTTCCTTACCATGTGTT-TTTCTGATATCGACAAAGTCGAAGATATCTGCATGC 206 Query 63381 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63440 || || |||||| | | ||| | | | ||||| | ||||| || ||||| || | || Sbjct 205 CATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTGTTACCACCCTGGTCCACATAA 146 Query 63441 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63500 | || |||||||| |||| | | ||| ||||| | |||||||| |||| |||||| Sbjct 145 CGGGCAGTGTTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTA 86 Query 63501 CCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGC 63559 || | |||||| || ||| ||| || || | || ||| ||||| | || ||||| Sbjct 85 CCAGCGATATAAGAACCTGTGGAACGGATGTTGTTGATATGA-AGACCAACACCACCTGC 27 Query 63560 CATTTTAGAGAT 63571 |||| || || Sbjct 26 AGTTTTGGAAAT 15 >seq4177 Length=3506 Score = 217 bits (240), Expect = 2e-51 Identities = 594/899 (66%), Gaps = 13/899 (1%) Strand=Plus/Minus Query 33271 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33330 |||| |||||||| || |||||||| ||| || | |||||||| || ||||| | Sbjct 3394 CTTG-GACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCT 3336 Query 33331 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttt 33390 | || |||| || || |||||||||||||| || || || || ||||| ||| | Sbjct 3335 TACCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT 3276 Query 33391 tAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTT 33450 | || || | | || ||| || |||||||| || | ||| ||||| | | Sbjct 3275 TGTTACCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGT 3216 Query 33451 CACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAAT-TCTT-GTTCAAT 33508 || ||||| |||| | |||||| | || | ||||| | |||| ||||||| Sbjct 3215 CAGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAAT 3158 Query 33509 GGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCA-CTCGGTGGATGTAATAAAT 33567 || || | || | ||| | |||| | || || | | | | | |||| Sbjct 3157 TTCCACAGCCTCGGTGACAATTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTC-AAAT 3099 Query 33568 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGT 33627 | |||| ||| ||||| || ||| ||||| ||| |||||||||| || ||||||| Sbjct 3098 GGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGT 3039 Query 33628 TAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG 33687 | ||||| || | |||||||| | || | |||||| | ||| || ||||| || || | Sbjct 3038 TGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGG 2979 Query 33688 ATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG 33747 | ||||| || |||| ||||| | | |||||||||| ||||| || ||| | || Sbjct 2978 AACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGG 2919 Query 33748 CGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || ||| || ||||| || |||||| |||||||||| | || || | Sbjct 2918 CGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGG 2859 Query 33805 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33864 | | |||||||| || | | | |||| ||| || || | ||||||||||||| Sbjct 2858 TGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCA 2799 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 | | || |||| || ||||| |||||||| || || || |||||||||| Sbjct 2798 ACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCT 2739 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 | ||||| | ||| || ||||| || | || ||| | || |||||||| || || | Sbjct 2738 TTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATAC 2679 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--G 34041 | ||| || || ||||| || | || || ||| || | ||| ||| || Sbjct 2678 CGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCA 2619 Query 34042 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 || || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || | Sbjct 2618 TTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAG 2559 Query 34102 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 | || || || || || | |||||| ||||| || | ||| ||||||| |||| Sbjct 2558 AAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 2500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629635338659280