Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177875.1_202017-04- 25] 23,151 sequences; 12,698,172 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1558 114 2e-20 seq17683 104 3e-17 seq4662 89.7 8e-13 >seq1558 Length=8598 Score = 114 bits (126), Expect = 2e-20 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 6981 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 6922 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| || || || || || ||||| || ||||| || || || || Sbjct 6921 TCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAT 6862 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 6861 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 6802 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 6801 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 6750 >seq17683 Length=121 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954 ||||| |||| |||||| |||||||||||||| || ||||| || ||||| ||||||||| Sbjct 8 AACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATT 67 Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 | ||| |||||||| || |||||| ||||| || || || || || || Sbjct 68 TTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAACAT 117 >seq4662 Length=195 Score = 89.7 bits (98), Expect = 8e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 ||| ||||| || ||||| || |||||||| || ||||||||||| | ||||||||| || Sbjct 1 AATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATCTTTGCCGGTAAACA 60 Query 155969 GCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATT 156027 || |||||| ||||| | || || || ||||| || ||| ||| | || ||||| Sbjct 61 ACTAGAAGATGGTAGAACGCTGTCGGACTACAATAT-TCAAAAGGAGTCCACTCTTCACC 119 Query 156028 TAGTGTTAAGATTAAGAGGCGGT 156050 | || || || || || || ||| Sbjct 120 TCGTCTTGAGGTTGAGGGGTGGT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731660205391600