Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6460 91.5 2e-13 seq4 89.7 8e-13 >seq6460 Length=11281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 70033 TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATT 70092 ||| ||| | | || |||| || || ||| || ||||||||||| || |||||||| Sbjct 3475 TTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTTTACGGATT 3416 Query 70093 CCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGA-GACAGACTATTCGGGTCAG 70150 || |||||||| | || | || || |||| ||||| ||| |||||| | || || Sbjct 3415 TCAATGGAGGCATTTTGGTGCTAAATACA-AGACGTGCGATGAC-GACTATACTGGACAA 3358 Query 70151 GGTGTTGATCAATTGCAGACA-ATCATTGACACTCTCAAGACCAATCCAACAGATAGGAG 70209 ||| ||||||||||| | ||| | ||| | | || ||||| ||||| ||||| || Sbjct 3357 GGTATTGATCAATTG-AAACAGGTTATTCATAAACTAAAGACAAATCCCTACGATAGAAG 3299 Query 70210 GATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGC 70254 ||| | ||| | | ||||| || || ||||| || ||||||| Sbjct 3298 AATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGC 3254 >seq4 Length=10810 Score = 89.7 bits (98), Expect = 8e-13 Identities = 310/475 (65%), Gaps = 13/475 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || |||||| | || || || | ||| | ||| ||||||| ||||| || || Sbjct 5884 CAGGGTGGTAATAAAAGACCTGGTGCGTTTGCCCTTTACCTGGAACCATGGCATGCTGAT 5825 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA---CGAGCCAGG 96992 | ||||| ||||| || || | || ||| || | |||||| | || || || Sbjct 5824 ATCTTTGATTTTATTGATATTAGGAAGAACCACGG---TAAAGAGGAAATTCGTGCAAGA 5768 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 || ||||| ||| || ||| | || ||| | ||||||||||| ||| | || ||| Sbjct 5767 GATTTGTTCCCTGCTCTATGGATTCCTGATCTTTTCATGAAGCGTGTCGAAGAAAATGGG 5708 Query 97053 TACTGGAGCCTAATGTGCCCCGAC-TCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 ||||| | | || | || || || | || ||| | |||||| | || || || Sbjct 5707 ACCTGGA-CATTATTCTCTCCAACATCAGCTCCTGGTTTAAGCGATTGTTACGGTGACGA 5649 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGC 97171 ||||||||| || || ||||||| |||| || || || |||| | || | || Sbjct 5648 GTTTGAGGCTCTATATACCCGCTACGAGAAAGAAGGTCG--TGGTAAGACTA-TCAAAGC 5592 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | || | ||| | |||| || ||||| || ||||| || || | | || | Sbjct 5591 CCAAAAATTATGGTATTCCATTTTGGAAGCTCAAACTGAAACTGGTACACCTTTCGTTGT 5532 Query 97232 CTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || | | || | | || ||| |||| || ||||||| | Sbjct 5531 TTACAAGGAT-GCTTGTAACAGAAAATCTAATCAAAAAAACTTAGGTGTCATCAAGTCAT 5473 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 | || | ||| |||||||| || ||| | |||| || || || || ||||| Sbjct 5472 CAAACTTATGCTGTGAAATTGTTGAATACTCAGCTCCAGATGAAACTGCTGTTTG 5418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740954710652800