Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq6299 334 2e-87 seq6821 149 2e-31 seq8799 141 3e-29 seq5885 100 8e-17 >seq6299 Length=362 Score = 334 bits (370), Expect = 2e-87 Identities = 275/335 (82%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 42536 GAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACG 42595 |||||||||||||| || |||||||| ||||| || |||||||| || |||| || ||| Sbjct 28 GAGGCGAGGATCGAGGCACCGCCGATGCCGTCGCCGCCCGTGCGGGCGCCGAACAGCACG 87 Query 42596 ACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCC 42655 ||||||||||| | ||||| ||||||||||| | || ||||||||| || |||||||| Sbjct 88 ACCTTGTTGCCGACGCCCGAGGCGTTGGCGAGGTGGATGTCCTCGTGGCGCAGCACGCCG 147 Query 42656 ACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCG 42715 | ||| |||||||| || || ||| |||| || || ||||| ||| ||||||| Sbjct 148 AGGCACAGCGCGTTGACGAGAGGGTTGCCCTGGTACGAGGAGTCGAAGACGAGCTCGCCG 207 Query 42716 CCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGC 42775 |||||||||||||| ||||||| |||||||||| || || |||||| |||||||||| Sbjct 208 CCGATGTTCGGCAGGCCGAGGCTGTTGCCGTAGCCGCCGACGCCGCTCACGACGCCGTGC 267 Query 42776 ACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCG 42835 ||||| ||||||||||| |||| |||| | ||||||||||| || ||||||||| ||| Sbjct 268 ACGACGCGCGCCGTGTCCGGGTGGTCGACGGCGCCGAAGCGGAGCTGGTCCATGACGGCG 327 Query 42836 ACCGGGCGAGCGCCCATGGAGATGATGTCGCGGAC 42870 || ||||| ||||||||||||||||||||||| || Sbjct 328 ACGGGGCGCGCGCCCATGGAGATGATGTCGCGCAC 362 >seq6821 Length=203 Score = 149 bits (164), Expect = 2e-31 Identities = 131/161 (81%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 42323 ACGTTGTCGAGCGAGACGTGCATTCCGCTGTTGCCGTTGGCGGCGAGCTCGCTCGTGGCG 42382 |||| ||||||| | |||||||| |||| || |||||| | ||||||||| ||| ||| Sbjct 202 ACGTCGTCGAGCCACACGTGCATGCCGCCGTCGCCGTTCGAGGCGAGCTCCGACGTCGCG 143 Query 42383 CAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCAGCT-CGTCGCGGTACAG 42441 || |||||||| || || |||||||||||||| |||| || | || || |||| || || Sbjct 142 CACGAGATGCCGGCGGCACCGAGGTCCTGGATGCCCTCCACGACCTGCGCCGCG-TAGAG 84 Query 42442 CTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGAAGGGGT 42482 ||| ||||||||||||||||| |||||||| |||||||| Sbjct 83 CTCGAGGCAGCACTCGATGAGGACCTTCTCCATGAAGGGGT 43 >seq8799 Length=799 Score = 141 bits (156), Expect = 3e-29 Identities = 126/154 (82%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 |||||||| || ||||| |||||||| | ||||||||||| | |||||| ||||||||| Sbjct 155 ATGGCAGGTGACACCGTCATCACGGTGATCGGGAACCTCACGGGAGACCCGGAGCTGCGT 96 Query 11066 TACACGCAGAACGGGCTGC--CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCT 11123 | ||| | |||| ||| ||||||| |||||||| | || || |||||||| |||| Sbjct 95 TTCACCCCCT-CGGG-TGCGGCGGTGGCCAACTTCACGGTGGCGTCCACGCCGCGGACCT 38 Query 11124 TCGACCGTCAGGCGAACGAGTGGAAGGACGGCGA 11157 ||||||| ||| ||||||||||||||||||| || Sbjct 37 TCGACCGCCAGTCGAACGAGTGGAAGGACGGGGA 4 >seq5885 Length=161 Score = 100 bits (110), Expect = 8e-17 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 42992 CCCATCCCGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTG 43051 || || ||||| | ||| ||| ||||| ||||| | | | |||||| || Sbjct 157 CCGATGCCGACGAGCAGGTGCTTCTTCATCTAGTCCGTGGTCGCCGCGCCGAACTTCGAC 98 Query 43052 AGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCC 43111 |||| || |||| ||||||||| ||||||||||| |||||||| || ||||||||||| Sbjct 97 AGGTGGACCTTGGACGACTTGTACGAGCAGTGCTCGGACCACATGACGGAGTACATCGCG 38 Query 43112 AGCTCGCCCGAGGTGGGGCGGCGGCCGAGGATCTC 43146 ||||| | | ||||||||||| || ||||| || Sbjct 37 AGCTCCGCGGCCGTGGGGCGGCGCCCCAGGATGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148226542394720