Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1805 215 6e-51 seq4 168 8e-37 seq7206 167 3e-36 >seq1805 Length=14085 Score = 215 bits (238), Expect = 6e-51 Identities = 1113/1763 (63%), Gaps = 60/1763 (3%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 6683 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 6742 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 6743 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 6800 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 6801 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 6858 Query 47189 TGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTC 47244 ||||| || |||| || ||| |||| ||| | ||| | || ||||||||| || Sbjct 6859 GGTTTTGTATAATTCCTTCAAT-TCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA- 6916 Query 47245 Cgttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtt 47297 |||| | ||||| |||||| || | |||| ||||| | || | | Sbjct 6917 --TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTA 6971 Query 47298 aat---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGG 47354 ||| || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 6972 AATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGA 7027 Query 47355 CTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTT 47414 || || || || |||||| | ||||||||| |||| |||||| | |||| Sbjct 7028 GAGTACATGTTTGAGGTCACTGGTTCGAAGCATTCATTATAACCAAGAATTTGGGAAGTT 7087 Query 47415 GATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTN 47473 || || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 7088 GAGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTC 7146 Query 47474 NNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTG 47533 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 7147 CTTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTG 7206 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGC 47593 | ||| || || |||||||| | | | || ||| ||| | | || || Sbjct 7207 TAAAATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGC 7266 Query 47594 GAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | |||||| ||||| | | | || || || ||||| || |||| | ||||||| Sbjct 7267 CAATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAG 7326 Query 47654 ATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATC 47712 | | |||||| |||||||| || || | | ||||| ||||| | Sbjct 7327 AGTTTGAGCTTCTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAGC 7385 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 | || ||||||| | |||| |||||||| | |||| ||| ||| || || | || Sbjct 7386 CCTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTG 7445 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | || || |||| | | || | |||| || Sbjct 7446 GATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGT 7505 Query 47833 TTAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA- 47876 ||| | | |||| | | |||| ||| || || ||||| || Sbjct 7506 GCAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCT 7564 Query 47877 ---AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || || ||||| |||| |||||| || || |||| || | ||||| | Sbjct 7565 GGTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACG 7624 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| ||| ||||||||||||| || || || || || | || Sbjct 7625 ATTTCACAACATAAGTTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTG 7684 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || Sbjct 7685 TTACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATG 7744 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | | | | ||||| | | | || | | || |||||| | Sbjct 7745 GCATACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGA 7801 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 7802 GTATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGT 7861 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | || | |||| | |||| | || || | |||| || | ||| || ||||| Sbjct 7862 GAAAATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCAT 7921 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 ||||| || ||||| || | | | |||||| || ||| | || | | || Sbjct 7922 AGAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCG 7981 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | |||||| | ||||| ||||||||||| || || | | || | |||| |||| Sbjct 7982 ACAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTC 8041 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| || || || | ||| | ||||||||| || |||| | | ||| || | Sbjct 8042 TTGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATC 8101 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | || ||||| |||| ||||| || | |||||| || | | | || || | Sbjct 8102 AACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTG 8161 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| | ||||||||| |||| || || | |||||| ||| | |||||| Sbjct 8162 ATATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCA 8221 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| ||||| ||| ||||| |||| | || ||||| ||||||||| ||| Sbjct 8222 TAAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGA 8281 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || || || | || ||||| ||||| || || ||| | || || | || | | Sbjct 8282 TGTGGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATC 8341 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || ||||| || | | ||||| || ||||| | ||| ||||||| | |||||| Sbjct 8342 AAATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGC 8401 Query 48714 ATTAACATATATTGAGGTCTTTC 48736 |||| || || ||||| | ||| Sbjct 8402 ATTACCAAATGCTGAGGACGTTC 8424 >seq4 Length=10810 Score = 168 bits (186), Expect = 8e-37 Identities = 808/1270 (64%), Gaps = 43/1270 (3%) Strand=Plus/Plus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 5478 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 5537 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 5538 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 5596 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 5597 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 5654 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 5655 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 5713 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 5714 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 5773 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | ||||||||||| Sbjct 5774 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGCATG 5833 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 5834 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 5893 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | ||| || || || |||| | | ||| || | | ||| || || |||| || || Sbjct 5894 ACGGGCGGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 5953 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 5954 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 6013 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 6014 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 6073 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 6074 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 6133 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 6134 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 6193 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 6194 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 6253 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 6254 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 6313 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TA 48854 |||| |||||| || | |||| | ||||| || || | | | ||||| | || | Sbjct 6314 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCA 6372 Query 48855 T----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------ATTG 48888 | ||| | |||| ||| | | | || | || |||| Sbjct 6373 TGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTG 6431 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 6432 ACGTATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAA 6491 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | ||||||||||||| | || ||||||||||||| || || ||| || Sbjct 6492 TTAGAAATGGCAATTCTAGCAGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATA 6550 Query 49008 CTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCC 49066 | || |||| || ||||| | |||| ||| | || || |||||| ||| | || Sbjct 6551 AGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACC 6610 Query 49067 TTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAA 49124 ||| | | | || | | || || | || ||||| | ||| | ||||| Sbjct 6611 AGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAG 6668 Query 49125 CATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCA 49184 ||||| | ||| | || ||||| ||||| || | | |||||||||||||| Sbjct 6669 CATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCT 6728 Query 49185 CGTTTTATAA 49194 | |||||||| Sbjct 6729 C-TTTTATAA 6737 >seq7206 Length=17375 Score = 167 bits (184), Expect = 3e-36 Identities = 342/502 (68%), Gaps = 6/502 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 138 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 197 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 198 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCAACCAAC 257 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 258 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 317 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 318 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 375 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 376 TTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 435 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 436 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 495 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 496 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCCGAGAAAAAGACACCTT 555 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 556 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 614 Query 19147 TTCAGTGCCCAATCAGCCTTCT 19168 | | ||||| || ||||||| Sbjct 615 CTTAAAGCCCATTCGGCCTTCT 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562029542659200