Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq8943 286 1e-72 seq6176 269 9e-68 seq10370 196 2e-45 seq10901 120 1e-22 seq5848 114 4e-21 seq8563 96.9 1e-15 seq9295 93.3 1e-14 >seq8943 Length=399 Score = 286 bits (316), Expect = 1e-72 Identities = 302/398 (76%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 39347 AGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCA 39406 ||||||||| ||||||| ||| | ||| ||||| || ||| |||| |||| | || Sbjct 398 AGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCG 339 Query 39407 TTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGC 39466 ||||| || || || ||||||||||| ||| | ||||||||| ||||| ||||||||| Sbjct 338 TTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTACAGC 279 Query 39467 GCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGC 39526 |||| ||||||||||| ||| ||||| ||||| ||||||| | |||| || || | |||| Sbjct 278 GCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGC 219 Query 39527 ATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAG 39586 || | |||||||||||||||||||| |||||||||||| || ||||||||||| Sbjct 218 ATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTAC 159 Query 39587 GTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTACGACGG 39646 | || |||||| |||| || ||| | |||| ||||| | ||| | Sbjct 158 GACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCCTTGCCGTTCATCTCG 99 Query 39647 ATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTG 39706 |||||||||| |||||| | | |||||||||||||||||| |||||||||||||||||| Sbjct 98 ATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTG 39 Query 39707 ACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTG 39744 | ||| | || |||| || |||||||| |||| Sbjct 38 ATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTG 1 >seq6176 Length=304 Score = 269 bits (298), Expect = 9e-68 Identities = 242/304 (80%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 39061 CGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39120 |||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || Sbjct 304 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 245 Query 39121 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC 39180 ||||| || || ||| |||||| ||||||||||| ||| ||| ||||| || ||||| Sbjct 244 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 185 Query 39181 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39240 || ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 184 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 125 Query 39241 CATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGC 39300 ||| || || ||||||||||||||||| || || ||| || |||||||||||||| || Sbjct 124 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 65 Query 39301 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAG 39360 | |||| |||||||||||||||| |||||| ||||| ||| ||| ||||||||| || Sbjct 64 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 5 Query 39361 GGGC 39364 |||| Sbjct 4 GGGC 1 >seq10370 Length=172 Score = 196 bits (216), Expect = 2e-45 Identities = 141/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATG 40183 ||||||||||| |||||||||||||||||||| ||||| || || || |||||||||| | Sbjct 2 CCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACG 61 Query 40184 TCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40243 || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 62 TCGACGTCGGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGC 121 Query 40244 TCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCA 40286 ||||| || ||||| |||||||| || | | ||||| | ||| Sbjct 122 TCCAGCGGGTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCA 164 >seq10901 Length=204 Score = 120 bits (132), Expect = 1e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39964 CCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTC 40023 |||| |||||| || | ||||||||| | | ||| ||||||||| |||||||| Sbjct 1 CCCCGACAGGGGGATGTCCTTGCCCATCACGGCCGGCGGCATCGCCTTGGTGAGCTTCTC 60 Query 40024 GCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTT 40083 || | | |||||| | | || | || |||| |||||| | ||| | ||||| Sbjct 61 CCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGCCTGCTTGGCCTT 120 Query 40084 GATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTA 40143 ||| |||| |||| ||||||| ||||| |||| | ||||||||||| |||||||| Sbjct 121 GATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTTCTCCGTGACGTA 180 Query 40144 CCGGATGACCTCGCCGCGACGCCG 40167 |||||||||||| ||||| || || Sbjct 181 CCGGATGACCTCCCCGCGCCGACG 204 >seq5848 Length=556 Score = 114 bits (126), Expect = 4e-21 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40339 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 ||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 556 GGCCCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGAT 497 Query 40399 CATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCGGTCCCGTTCGGGAACCG 40458 | ||| |||||||||| |||||||| | ||| | | ||||| ||| |||| Sbjct 496 GACCTCGGTCTCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCG 437 Query 40459 TC-GAGCTGCCCCACGGTGGACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGG 40517 | | || | ||| || | ||||| | |||||||| || ||| | ||||||| Sbjct 436 GCGGTGCAG-CCCGCGCTCCACCTCCTTGACGAACCAGCTCGTCTCGTCCTCGCCCTCGG 378 Query 40518 GCACCGGGAAGCGAGGCATG 40537 | || ||||| || |||||| Sbjct 377 GGACGGGGAACCGCGGCATG 358 >seq8563 Length=328 Score = 96.9 bits (106), Expect = 1e-15 Identities = 222/329 (67%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 40928 GCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTG 40987 |||| ||| |||| |||||| || || ||| |||| | || ||||| || | Sbjct 3 GCCTCGTCCCACTGTCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTC 62 Query 40988 GTGACGATCAGGCCCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTC 41047 || ||| ||||||| | || | || ||||||| |||||||||||| |||| Sbjct 63 GTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTG 122 Query 41048 CCGAGCAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTC--ATGAGGTTGTGCAGGCCGG 41105 || | | | ||||| | ||| |||| | || | | ||||||||||| || Sbjct 123 CCCATCTGCCCCTCGAGCGACG--CGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCT 180 Query 41106 TCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAAC 41165 |||| || ||||| | ||| | ||| |||||||||||||| | ||||||| Sbjct 181 CGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAGACGTCGTCGG 240 Query 41166 GCTTCTGGTCCTCGGTGCCC-CACTGCACCCGCTCCTGATCGAA---GCGCGAGCCCGGA 41221 || ||| ||| | ||||| || |||| || ||| ||||| || || |||||| Sbjct 241 ACTCCTGCCCCT-GCTGCCCGAACCGCACGCGGGTCTGGTCGAACCGGCTCGTGCCCGGC 299 Query 41222 GCCATGTACGCCTCGATGCCGATGATCGG 41250 | | ||||||||||| |||||||||||| Sbjct 300 GTGACGTACGCCTCGACGCCGATGATCGG 328 >seq9295 Length=372 Score = 93.3 bits (102), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC-CGGTCATCGAAGTCGA 40181 |||| || ||||| ||||| | |||||||||| |||| ||| | | | |||| ||||| Sbjct 83 CCCGAACGTCTCGTAGACGTGCTGGATGACCTCCTCGCGCCGCGCCGAC-TCGATGTCGA 141 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 |||| | ||| ||| | ||||||||||| ||||| |||||||| | || |||| Sbjct 142 TGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCGAGGAAGCGCTCGAACAGCAGGCCGT 201 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 ||| || | |||| | | ||||| ||||| |||| |||| || || |||| Sbjct 202 GCTTCACCGCGTCGACGGCCGTGATGCCGAGCGCGTAGCAGACCGCGGAGTTCGCGGCCG 261 Query 40302 AGCCTCGCCC 40311 |||| ||||| Sbjct 262 AGCCGCGCCC 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160384913562720