Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04-
27] 11,280 sequences; 13,094,546 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq8943 286 1e-72
seq6176 269 9e-68
seq10370 196 2e-45
seq10901 120 1e-22
seq5848 114 4e-21
seq8563 96.9 1e-15
seq9295 93.3 1e-14
>seq8943
Length=399
Score = 286 bits (316), Expect = 1e-72
Identities = 302/398 (76%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 39347 AGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCA 39406
||||||||| ||||||| ||| | ||| ||||| || ||| |||| |||| | ||
Sbjct 398 AGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCG 339
Query 39407 TTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGC 39466
||||| || || || ||||||||||| ||| | ||||||||| ||||| |||||||||
Sbjct 338 TTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTACAGC 279
Query 39467 GCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGC 39526
|||| ||||||||||| ||| ||||| ||||| ||||||| | |||| || || | ||||
Sbjct 278 GCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGC 219
Query 39527 ATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAG 39586
|| | |||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 218 ATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTAC 159
Query 39587 GTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTACGACGG 39646
| || |||||| |||| || ||| | |||| ||||| | ||| |
Sbjct 158 GACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCCTTGCCGTTCATCTCG 99
Query 39647 ATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTG 39706
|||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||||
Sbjct 98 ATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTG 39
Query 39707 ACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTG 39744
| ||| | || |||| || |||||||| ||||
Sbjct 38 ATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTG 1
>seq6176
Length=304
Score = 269 bits (298), Expect = 9e-68
Identities = 242/304 (80%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 39061 CGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39120
|||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| ||
Sbjct 304 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 245
Query 39121 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC 39180
||||| || || ||| |||||| ||||||||||| ||| ||| ||||| || |||||
Sbjct 244 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 185
Query 39181 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39240
|| ||| |||||| ||||||||||||| | || | ||| ||||||||||||
Sbjct 184 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 125
Query 39241 CATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGC 39300
||| || || ||||||||||||||||| || || ||| || |||||||||||||| ||
Sbjct 124 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 65
Query 39301 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAG 39360
| |||| |||||||||||||||| |||||| ||||| ||| ||| ||||||||| ||
Sbjct 64 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 5
Query 39361 GGGC 39364
||||
Sbjct 4 GGGC 1
>seq10370
Length=172
Score = 196 bits (216), Expect = 2e-45
Identities = 141/163 (87%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATG 40183
||||||||||| |||||||||||||||||||| ||||| || || || |||||||||| |
Sbjct 2 CCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACG 61
Query 40184 TCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40243
|| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 62 TCGACGTCGGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGC 121
Query 40244 TCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCA 40286
||||| || ||||| |||||||| || | | ||||| | |||
Sbjct 122 TCCAGCGGGTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCA 164
>seq10901
Length=204
Score = 120 bits (132), Expect = 1e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 39964 CCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTC 40023
|||| |||||| || | ||||||||| | | ||| ||||||||| ||||||||
Sbjct 1 CCCCGACAGGGGGATGTCCTTGCCCATCACGGCCGGCGGCATCGCCTTGGTGAGCTTCTC 60
Query 40024 GCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTT 40083
|| | | |||||| | | || | || |||| |||||| | ||| | |||||
Sbjct 61 CCCCATCGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGCCTGCTTGGCCTT 120
Query 40084 GATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTA 40143
||| |||| |||| ||||||| ||||| |||| | ||||||||||| ||||||||
Sbjct 121 GATGGTGCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTTCTCCGTGACGTA 180
Query 40144 CCGGATGACCTCGCCGCGACGCCG 40167
|||||||||||| ||||| || ||
Sbjct 181 CCGGATGACCTCCCCGCGCCGACG 204
>seq5848
Length=556
Score = 114 bits (126), Expect = 4e-21
Identities = 147/200 (74%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 40339 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398
||||||| ||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 556 GGCCCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGAT 497
Query 40399 CATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCGGTCCCGTTCGGGAACCG 40458
| ||| |||||||||| |||||||| | ||| | | ||||| ||| ||||
Sbjct 496 GACCTCGGTCTCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCG 437
Query 40459 TC-GAGCTGCCCCACGGTGGACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGG 40517
| | || | ||| || | ||||| | |||||||| || ||| | |||||||
Sbjct 436 GCGGTGCAG-CCCGCGCTCCACCTCCTTGACGAACCAGCTCGTCTCGTCCTCGCCCTCGG 378
Query 40518 GCACCGGGAAGCGAGGCATG 40537
| || ||||| || ||||||
Sbjct 377 GGACGGGGAACCGCGGCATG 358
>seq8563
Length=328
Score = 96.9 bits (106), Expect = 1e-15
Identities = 222/329 (67%), Gaps = 9/329 (3%)
Strand=Plus/Plus
Query 40928 GCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTG 40987
|||| ||| |||| |||||| || || ||| |||| | || ||||| || |
Sbjct 3 GCCTCGTCCCACTGTCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTC 62
Query 40988 GTGACGATCAGGCCCTCGTTGTGCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTC 41047
|| ||| ||||||| | || | || ||||||| |||||||||||| ||||
Sbjct 63 GTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTG 122
Query 41048 CCGAGCAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTC--ATGAGGTTGTGCAGGCCGG 41105
|| | | | ||||| | ||| |||| | || | | ||||||||||| ||
Sbjct 123 CCCATCTGCCCCTCGAGCGACG--CGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCT 180
Query 41106 TCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAAC 41165
|||| || ||||| | ||| | ||| |||||||||||||| | |||||||
Sbjct 181 CGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAGACGTCGTCGG 240
Query 41166 GCTTCTGGTCCTCGGTGCCC-CACTGCACCCGCTCCTGATCGAA---GCGCGAGCCCGGA 41221
|| ||| ||| | ||||| || |||| || ||| ||||| || || ||||||
Sbjct 241 ACTCCTGCCCCT-GCTGCCCGAACCGCACGCGGGTCTGGTCGAACCGGCTCGTGCCCGGC 299
Query 41222 GCCATGTACGCCTCGATGCCGATGATCGG 41250
| | ||||||||||| ||||||||||||
Sbjct 300 GTGACGTACGCCTCGACGCCGATGATCGG 328
>seq9295
Length=372
Score = 93.3 bits (102), Expect = 1e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC-CGGTCATCGAAGTCGA 40181
|||| || ||||| ||||| | |||||||||| |||| ||| | | | |||| |||||
Sbjct 83 CCCGAACGTCTCGTAGACGTGCTGGATGACCTCCTCGCGCCGCGCCGAC-TCGATGTCGA 141
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
|||| | ||| ||| | ||||||||||| ||||| |||||||| | || ||||
Sbjct 142 TGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCGAGGAAGCGCTCGAACAGCAGGCCGT 201
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
||| || | |||| | | ||||| ||||| |||| |||| || || ||||
Sbjct 202 GCTTCACCGCGTCGACGGCCGTGATGCCGAGCGCGTAGCAGACCGCGGAGTTCGCGGCCG 261
Query 40302 AGCCTCGCCC 40311
|||| |||||
Sbjct 262 AGCCGCGCCC 271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160384913562720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |