Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq8943 358 2e-94 seq6176 269 8e-68 seq10370 165 3e-36 seq10901 105 2e-18 seq5848 104 7e-18 seq8563 93.3 1e-14 >seq8943 Length=399 Score = 358 bits (396), Expect = 2e-94 Identities = 318/398 (80%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 38254 AGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGACCG 38313 |||||||| || || |||| ||| | ||| |||||||| ||| ||||| |||| | ||| Sbjct 398 AGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCG 339 Query 38314 TTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGC 38373 |||||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||| Sbjct 338 TTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTACAGC 279 Query 38374 GCGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGC 38433 |||| ||||||||||| ||| ||||||| ||||||||||| | |||| || || | |||| Sbjct 278 GCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGC 219 Query 38434 ATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAG 38493 || | |||||||||||||||||| || ||| ||||| || | || ||||||||||| Sbjct 218 ATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTAC 159 Query 38494 GTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGG 38553 | ||| |||||| |||| || |||||| |||| |||| | ||| | Sbjct 158 GACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCCTTGCCGTTCATCTCG 99 Query 38554 ATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTC 38613 |||||||||| ||||||| | | ||||||||||||||| |||||||||||||||||||| Sbjct 98 ATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTG 39 Query 38614 AGCAGGCCCAGGGCCTCGCAGCTCGGGTAGTCGAACTG 38651 | ||||| ||| ||||| | |||||||||||||||| Sbjct 38 ATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTG 1 >seq6176 Length=304 Score = 269 bits (298), Expect = 8e-68 Identities = 242/304 (80%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 37968 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38027 |||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || Sbjct 304 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 245 Query 38028 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTC 38087 ||||| || || ||| |||||| |||||| |||| || || || ||||| || ||||| Sbjct 244 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 185 Query 38088 GCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCC 38147 | ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 184 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 125 Query 38148 CATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGC 38207 ||| ||||| || || ||||||||||| ||||| | ||||||||| ||||||||||| || Sbjct 124 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 65 Query 38208 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAG 38267 | |||| |||||||||||||||| |||||| ||| ||||| ||| |||||||| || || Sbjct 64 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 5 Query 38268 CGGC 38271 ||| Sbjct 4 GGGC 1 >seq10370 Length=172 Score = 165 bits (182), Expect = 3e-36 Identities = 139/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 39030 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGAT 39089 |||||||||||| |||||||||||||| || || || || ||||| || |||||||||| Sbjct 1 GCCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGAC 60 Query 39090 GTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 39149 ||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| Sbjct 61 GTCGACGTCGGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTG 120 Query 39150 AGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 | ||||| || |||||||| || | | ||| | ||||| ||||| Sbjct 121 CTCCAGCGGGTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCC 171 >seq10901 Length=204 Score = 105 bits (116), Expect = 2e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 38892 GCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTC 38951 |||||||||| | | ||| ||||||||| |||||||| || | | |||||| | | Sbjct 22 GCCCATCACGGCCGGCGGCATCGCCTTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCC 81 Query 38952 CAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGAT 39011 || | || |||| |||||| | ||| | |||||||| ||||| || |||| Sbjct 82 GAGGAGCCGCGCCGAGTCCTTGAGCGCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGAT 141 Query 39012 CTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCG 39071 ||| ||||| ||| |||||||||||| |||||||||||||| || || || || || Sbjct 142 CTGGGCGACGCGGTCGTCGCCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCG 201 Query 39072 ACG 39074 ||| Sbjct 202 ACG 204 >seq5848 Length=556 Score = 104 bits (114), Expect = 7e-18 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39247 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39306 |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| |||| Sbjct 555 GCCCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATG 496 Query 39307 ATGTCGATCTCGTACTCGACCTGCGTGCGGTGCTCGTCGTCGTACCCACCGGGGAAGCGG 39366 | ||| ||||||||| ||||| |||| | |||| | || |||| | ||| Sbjct 495 ACCTCGGTCTCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCGG 436 Query 39367 CGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTGGC-CCTC-CGT-CTGGCCCTCG 39423 |||| || ||| | || || ||| || |||| || | || ||| || ||||||| Sbjct 435 CGGTGCA-GCC--CGCGCTCCACCTCCTTGACGAACCAGCTCGTCTCGTCCTCGCCCTCG 379 Query 39424 GGCACCGGGAAGCGGGGCATGAGGTTC 39450 || || ||||| || |||||| |||| Sbjct 378 GGGACGGGGAACCGCGGCATGTAGTTC 352 >seq8563 Length=328 Score = 93.3 bits (102), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39928 AGCTCGGCGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCGCTGTACGAGCGAGAGGAG 39987 || ||| |||||||||||| |||| || | | | |||||| ||| | | || || Sbjct 96 AGGTCGCGGTCCATGCGCGGCCACTTGCCCATCTGCCCCTCGAGCGACGCGAGCGACGAC 155 Query 39988 AGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTGGCGAGCATGGTCATGTGGGTGTAG 40047 | ||||||||||||||| || |||| | | ||||||| |||||||| ||||| Sbjct 156 GCCCGGAACAGGTTGTGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTAC 215 Query 40048 GCACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCC-CACTGGACCCGCTC 40106 ||||| || | ||||||| || |||| | || ||||| || | || || Sbjct 216 GCACCGCGCGCCGAGACGTCGTCGGACTCCTGCCCCTGC-TGCCCGAACCGCACGCGGGT 274 Query 40107 CTGGTCGGAACGGTGC---CCCGGTGCGACGTACGCCTCGATCCCGATGATGGG 40157 ||||||| | ||| | ||||| | |||||||||||||| |||||||| || Sbjct 275 CTGGTCGAACCGGCTCGTGCCCGGCGTGACGTACGCCTCGACGCCGATGATCGG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159693806148960