Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq8943 358 2e-94 seq6176 273 7e-69 seq10370 159 1e-34 seq10901 114 4e-21 seq8563 107 6e-19 seq5848 86.0 2e-12 >seq8943 Length=399 Score = 358 bits (396), Expect = 2e-94 Identities = 318/398 (80%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 38687 AGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCG 38746 |||||||| || || |||| ||| | ||| |||||||| ||| ||||| |||| ||||| Sbjct 398 AGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCG 339 Query 38747 TTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGC 38806 |||||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||| Sbjct 338 TTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTACAGC 279 Query 38807 GCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGC 38866 || | |||||| |||| ||| ||||||| ||||||||||| | |||| || || | |||| Sbjct 278 GCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGC 219 Query 38867 ATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAC 38926 || | ||||||||||||||||||||| ||||||||| || | || |||||||||||| Sbjct 218 ATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTAC 159 Query 38927 GTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGG 38986 | ||| ||| || |||| || |||||| |||| |||| | ||| | Sbjct 158 GACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCCTTGCCGTTCATCTCG 99 Query 38987 ATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTC 39046 |||||||||| ||||||| | | ||||||||||||||| |||||||||||||||||||| Sbjct 98 ATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTG 39 Query 39047 AGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTG 39084 | ||||| || ||||| | |||||||||||||||| Sbjct 38 ATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTG 1 >seq6176 Length=304 Score = 273 bits (302), Expect = 7e-69 Identities = 243/304 (80%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 38401 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38460 |||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || Sbjct 304 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 245 Query 38461 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC 38520 ||||| || || ||| |||||| |||||| |||| || ||||| ||||| || ||||| Sbjct 244 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 185 Query 38521 GCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCC 38580 | ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 184 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 125 Query 38581 CATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGC 38640 ||| ||||| || || ||||||||||| ||||| | ||||||||| ||||||||||| || Sbjct 124 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 65 Query 38641 CTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAG 38700 | |||| |||||||||||||||| |||||| ||| ||||| ||| |||||||| || || Sbjct 64 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 5 Query 38701 CGGC 38704 ||| Sbjct 4 GGGC 1 >seq10370 Length=172 Score = 159 bits (176), Expect = 1e-34 Identities = 138/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 39463 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGAT 39522 |||||||||||| |||||||||||||| || || || || ||||| || |||||||||| Sbjct 1 GCCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGAC 60 Query 39523 GTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 39582 ||| ||||||||||| || || ||||| ||||| ||||||||||||||||| |||||||| Sbjct 61 GTCGACGTCGGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTG 120 Query 39583 AGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 | ||||| || |||||||| || | | ||| | ||||| ||||| Sbjct 121 CTCCAGCGGGTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCATGGAGCC 171 >seq10901 Length=204 Score = 114 bits (126), Expect = 4e-21 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 39325 GCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGAAAGGGCTTGTC 39384 ||||||||| | | ||| ||||||||| |||||||| || | | ||||| | | Sbjct 22 GCCCATCACGGCCGGCGGCATCGCCTTGGTGAGCTTCTCCCCCATCGCGAAGGGGAAGCC 81 Query 39385 CAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGAT 39444 || | || |||| |||||| | ||| | ||||||||| ||||||| || |||| Sbjct 82 GAGGAGCCGCGCCGAGTCCTTGAGCGCCTGCTTGGCCTTGATGGTGCCGTAGGTGACGAT 141 Query 39445 CTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCG 39504 ||| ||||| |||| |||||||||||| |||||||||||||| || || || || || Sbjct 142 CTGGGCGACGCGGTCGTCGCCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCG 201 Query 39505 ACG 39507 ||| Sbjct 202 ACG 204 >seq8563 Length=328 Score = 107 bits (118), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 40361 AGCTCGGCGTCCATGCGCGGGTACTTCCCGAGCAGACCCTCGCTGTACGAGCGAGAGGAG 40420 || ||| |||||||||||| |||| || | | | |||||| ||| | | || || Sbjct 96 AGGTCGCGGTCCATGCGCGGCCACTTGCCCATCTGCCCCTCGAGCGACGCGAGCGACGAC 155 Query 40421 AGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAG 40480 | ||||||||||||||| || |||| | ||||||||| |||||||| ||||| Sbjct 156 GCCCGGAACAGGTTGTGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTAC 215 Query 40481 GCACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCC-CACTGGACCCGCTC 40539 ||||| || | ||||||| || |||| | || ||||| || | || || Sbjct 216 GCACCGCGCGCCGAGACGTCGTCGGACTCCTGCCCCTGC-TGCCCGAACCGCACGCGGGT 274 Query 40540 CTGGTCGGA---GCGCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGG 40590 ||||||| | || || |||||||| |||||||||||||| |||||||| || Sbjct 275 CTGGTCGAACCGGCTCGTGCCCGGCGTGACGTACGCCTCGACGCCGATGATCGG 328 >seq5848 Length=556 Score = 86.0 bits (94), Expect = 2e-12 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39680 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39739 |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| |||| Sbjct 555 GCCCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATG 496 Query 39740 ATGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCGTCGTCGTACCCCTGCGGGAAGCGA 39799 | ||| ||||||| | ||||| | || | |||| | || | ||| | || Sbjct 495 ACCTCGGTCTCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCGG 436 Query 39800 CGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTGGC-CCTC-CGT-CTGGCCTTCG 39856 |||| || ||| | || || ||| || |||| || | || ||| || ||| ||| Sbjct 435 CGGTGCA-GCC--CGCGCTCCACCTCCTTGACGAACCAGCTCGTCTCGTCCTCGCCCTCG 379 Query 39857 GGCACCGGGAAGCGGGGCATGAGGTTC 39883 || || ||||| || |||||| |||| Sbjct 378 GGGACGGGGAACCGCGGCATGTAGTTC 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160218535852000