Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177885.1_202017-04- 27] 11,280 sequences; 13,094,546 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq8943 313 8e-81 seq6176 246 1e-60 seq10370 159 1e-34 seq10901 105 2e-18 seq5848 105 2e-18 seq8563 104 7e-18 >seq8943 Length=399 Score = 313 bits (346), Expect = 8e-81 Identities = 308/398 (77%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 39339 AGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCG 39398 |||||||| || || |||| ||| | ||| |||||||| ||| |||| |||| ||||| Sbjct 398 AGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGATGGGCTCGATCTTCTGCAGCCCG 339 Query 39399 TTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGC 39458 |||||||| || |||||||||||||||||| || ||||||||| ||||| ||||||||| Sbjct 338 TTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGCCCATCGGGCCCGGGCGGTACAGC 279 Query 39459 GCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGC 39518 |||| |||||| || ||| ||||| ||||||||||||| | |||| || || | |||| Sbjct 278 GCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCTTCATCTGGCGCAGGAGCGCGCGC 219 Query 39519 ATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAG 39578 || | |||||||||||||||||| || ||||||||| || | || ||||||||||| Sbjct 218 ATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGTCACCGCGCGCGAGCAGCTCGTAC 159 Query 39579 GTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGGCGCGG 39638 | || |||||| |||| || ||| | |||| ||||| | ||| | Sbjct 158 GACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGATCGGCTCCTTGCCGTTCATCTCG 99 Query 39639 ATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTC 39698 |||||||||| ||||||| | | ||||||||||||||| |||||||||||||||||||| Sbjct 98 ATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCCGCAGCCCGAGGAAGTCCATCTTG 39 Query 39699 ACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACTG 39736 | ||| |||| |||| || |||||||| |||| Sbjct 38 ATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACTG 1 >seq6176 Length=304 Score = 246 bits (272), Expect = 1e-60 Identities = 237/304 (78%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 39053 CGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39112 |||||| | ||| || | ||| |||||| | || ||||||||||||||||||||||| || Sbjct 304 CGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGTTGAAGGCGTAGCC 245 Query 39113 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTC 39172 ||||| || || ||| |||||| ||||||||||| || |||| ||||| || ||||| Sbjct 244 CGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGGAGTACCCGCGCTC 185 Query 39173 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCC 39232 || ||| |||||| ||||||||||||| | || | ||| |||||||||||| Sbjct 184 CCGGCAGCCCGCCTGGAACGGCACGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCC 125 Query 39233 CATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGC 39292 ||| || || || || ||||||||||| || || |||||| ||||||||||| || || Sbjct 124 CATCGCGCGCCGCAGCAGGTCGGCCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGC 65 Query 39293 CTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAG 39352 | |||| |||||||||||||||| || || ||||||||| | |||||||| || || Sbjct 64 CCTCTGGACCTGCTCCTGGTAGACGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAG 5 Query 39353 CGGC 39356 ||| Sbjct 4 GGGC 1 >seq10370 Length=172 Score = 159 bits (176), Expect = 1e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATG 40175 ||||||||||| |||||||||| ||| || || || || || || || |||||||||| | Sbjct 2 CCGTACTTCTCCGTGACGTACCGGATGACCTCCCCGCGCCGACGCTCGTCGAAGTCGACG 61 Query 40176 TCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40235 || ||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 62 TCGACGTCGGGCATCGACACACGCTCGGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGC 121 Query 40236 GGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCA 40278 | ||||| || || |||||||| | | ||||| | ||| Sbjct 122 TCCAGCGGGTCGAGCTCGGTGATGCCCATGAGGTAGGAGGCCA 164 >seq10901 Length=204 Score = 105 bits (116), Expect = 2e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39962 CAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGAC 40021 |||||| || |||||||||||| | | ||| ||||||||| |||||||| || | Sbjct 7 CAGGGGGATGTCCTTGCCCATCACGGCCGGCGGCATCGCCTTGGTGAGCTTCTCCCCCAT 66 Query 40022 CTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCG 40081 | |||||| | | || | ||||||| |||||| | ||| | |||||||| Sbjct 67 CGCGAAGGGGAAGCCGAGGAGCCGCGCCGAGTCCTTGAGCGCCTGCTTGGCCTTGATGGT 126 Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGAT 40141 ||| |||| ||||||| ||||| ||| | ||||||||||| |||||||||| ||| Sbjct 127 GCCGTAGGTGACGATCTGGGCGACGCGGTCGTCGCCGTACTTCTCCGTGACGTACCGGAT 186 Query 40142 CACGTCGCCCCGTCGCCG 40159 || || || || || || Sbjct 187 GACCTCCCCGCGCCGACG 204 >seq5848 Length=556 Score = 105 bits (116), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40331 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGAT 40390 ||||||| ||||||||||||||| || |||||||| |||||| |||| ||||||||| Sbjct 556 GGCCCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGAT 497 Query 40391 CATGTCGATCTCGTACTGAAGCTGCTTGCCATGCTCGTAGTCGGTCCCGTTCGGGAACCG 40450 | ||| |||||||||| |||||||| | ||| | | ||||| ||| |||| Sbjct 496 GACCTCGGTCTCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCG 437 Query 40451 TC-GAGCTGCACCACGGTGGACCTCGTCCTCGAACCACGTAACCTCGGTGTGACCCTCGG 40509 | | || || || || | ||||| | ||||||| | |||| | ||||||| Sbjct 436 GCGGTGCAGC-CCGCGCTCCACCTCCTTGACGAACCAGCTCGTCTCGTCCTCGCCCTCGG 378 Query 40510 GCACGGGGAAGCGGGGCATG 40529 | |||||||| || |||||| Sbjct 377 GGACGGGGAACCGCGGCATG 358 >seq8563 Length=328 Score = 104 bits (114), Expect = 7e-18 Identities = 221/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 40920 GCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTG 40979 |||||||| |||| |||||| || || ||| |||| | || ||||| || | Sbjct 3 GCCTCGTCCCACTGTCCGAGGCGCAGGCGCGTCTGGATCTCGCCCGACGGGCACCCGCTC 62 Query 40980 GTGACGATCAGGCCCTCGTTGTGCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTC 41039 || ||| ||||||| | || | || |||||| |||||||||||| |||| Sbjct 63 GTCGCGACGAGGCCCTTGCCGTACCGCTGGAGGAGGTCGCGGTCCATGCGCGGCCACTTG 122 Query 41040 CCGAGCAGGCCCTCCTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTC 41099 || | | | ||||| | ||| | | || | | ||||||||||| || Sbjct 123 CCCATCTGCCCCTCGAGCGACGCGAGCGACGACGCCCGGAACAGGTTGTGCAGACCCTCG 182 Query 41100 TTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGTAACGC 41159 |||| || |||||| | ||| | |||||||||||||||||| | ||||||| | Sbjct 183 TTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGCGCCGAGACGTCGTCGGAC 242 Query 41160 TTCTGGTCCTCGGTGCCC-CACTTGACGCGCTCCTGGTCGAA---GCGCGAGCCCGGAGC 41215 | ||| ||| | ||||| || ||||| ||||||||| || || |||||| | Sbjct 243 TCCTGCCCCT-GCTGCCCGAACCGCACGCGGGTCTGGTCGAACCGGCTCGTGCCCGGCGT 301 Query 41216 CATGTACGCCTCGATGCCGATGATCGG 41242 | ||||||||||| |||||||||||| Sbjct 302 GACGTACGCCTCGACGCCGATGATCGG 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160119349139840