Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177905.1_202017-04- 25] 4,892 sequences; 11,751,231 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3424 95.1 1e-14 seq3182 89.7 5e-13 seq1801 84.2 2e-11 >seq3424 Length=266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 |||||| || || || ||||| || || || ||||||||| | |||| | ||| || Sbjct 256 AAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAAG 197 Query 25319 CAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTC 25376 ||||| ||||||| ||||| |||| | | |||||||||||||| || ||||| ||| Sbjct 196 CAACTAGAAGATGGTAGAACGCTGTCGG--ACTACAATATTCAAAAGGAGTCCACTCTTC 139 Query 25377 ATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATTC 25414 | | || || || ||||| || || || |||||| || Sbjct 138 ACCTTGTCTTGAGGTTGAGGGGTGGTAACTGATCAGTC 101 >seq3182 Length=352 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 |||||| || || || ||||| || || ||||| |||||| | |||| | ||| || Sbjct 342 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAG 283 Query 25319 CAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTC 25376 ||||| ||||| | ||||| |||| | |||| || ||||| ||||| || || | | Sbjct 282 CAACTGGAAGACGGTAGAACGCTGTCTG--ATTATAACATTCAGAAAGAGTCTACGTTGC 225 Query 25377 ATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| ||||| ||||||||||| || Sbjct 224 ATTTGGTGTTGAGATTGAGAGGTGG 200 >seq1801 Length=12533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || |||||||| || | || || | ||||| ||| | Sbjct 8435 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 8494 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| || | || || || || || || || ||||| || || || Sbjct 8495 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 8554 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | | || || ||| | ||||||| ||||| | | ||| || Sbjct 8555 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTA 8614 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| || | || || || || ||||||||||| || Sbjct 8615 CAACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445067182477440