Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1375 111 1e-19 seq1754 100 2e-16 seq1667 95.1 1e-14 >seq1375 Length=22668 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || || ||||| || ||||||||||| | Sbjct 12770 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12829 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| || || || || ||||| || ||||||| |||||| || |||| Sbjct 12830 AAGGTT--CTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 12887 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||||||| ||||| |||||| | | |||| || | Sbjct 12888 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 12947 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | || || || || || |||| |||||| |||||||| ||||| Sbjct 12948 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 12996 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || ||||| |||| ||| ||| ||||||||||| || || | Sbjct 12542 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 12601 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||||||| || ||||| || ||||| | ||||| || ||||| Sbjct 12602 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 12661 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| || || | | |||| | || ||| Sbjct 12662 ATACCTTCCTTGTCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 12721 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || ||||| || || || |||||||| Sbjct 12722 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 12768 >seq1754 Length=22642 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || || ||||| || |||||||||||| | Sbjct 13959 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 14018 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| ||| || || || || ||||| | |||||||| || | Sbjct 14019 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 14076 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| || || ||| || | | |||| | || | Sbjct 14077 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 14136 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 | |||| |||||| ||||| || || | |||||| || || |||||||| ||| || Sbjct 14137 CTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTGGCT 14192 >seq1667 Length=53769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || || ||||||| ||| || || |||||||||||||| | Sbjct 17768 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 17709 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| |||| ||| || || || || ||||| | |||||||| || | Sbjct 17708 AAGGTT--CTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 17651 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||| ||| ||| || | | |||| | || | Sbjct 17650 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 17591 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | |||| || || ||||| || |||| |||||| ||||| Sbjct 17590 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 17551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395052531078868