Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq3454 190 6e-44 seq1524 167 7e-37 seq2953 152 2e-32 seq4136 150 5e-32 seq525 123 7e-24 seq3101 118 3e-22 seq3645 91.5 4e-14 seq231 87.8 5e-13 >seq3454 Length=248 Score = 190 bits (210), Expect = 6e-44 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 42048 CGTCGAGCCAGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCG 42107 |||| |||| | |||| ||| ||||| | ||| |||||||| ||| ||||| | Sbjct 11 CGTCCTGCCACGACGGGCGCGCGTACGGGCGGTGGTACACCGGGCCCTCGTGCGCGACGG 70 Query 42108 TGGACGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGC 42167 | |||||| ||||||||||| ||||| || || |||||| || || ||| | Sbjct 71 TCCGCGGGTCGACGTCGACGATGCGCTCGCCGTGGTGGTCGATCGTCAGGCGCCCGGAGT 130 Query 42168 CGGTGACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACG 42227 || |||||||||||| |||| |||||| || ||||||||| |||||| |||||||||| Sbjct 131 CGTTGACCTCGCCGATGACGGCGGTCTCGACGTCCCACTTGGCGGTGATGGCGAGGAACT 190 Query 42228 CGTCGAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAG 42285 ||||||||||| | |||| ||||| |||||||| |||||||||||||| |||||||| Sbjct 191 CGTCGAGCTTCTCCGGCGCGACGACCGCCATCATGCGCTCCTGCGACTCGGACATGAG 248 >seq1524 Length=383 Score = 167 bits (184), Expect = 7e-37 Identities = 148/185 (80%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42564 CGTCACCCCCCGTGCGCGCCGCGAAGAGGACGACCTTGTTGCCTAGGCCCGTCGCGTTGG 42623 |||| || |||||||| || |||| || |||||||||||||| | ||||| ||||||| Sbjct 1 CGTCGCCGCCCGTGCGGGCGCCGAACAGCACGACCTTGTTGCCGACGCCCGAGGCGTTGG 60 Query 42624 CGAGCTTGAGGTCCTCGTGCCGGAGCACGCCCACCGCCAGGGCGTTGACCAGCGGATTGG 42683 |||| | || ||||||||| || |||||||| | ||| |||||||| || || ||| Sbjct 61 CGAGGTGGATGTCCTCGTGGCGCAGCACGCCGAGGCACAGCGCGTTGACGAGAGGGTTGC 120 Query 42684 CCTGATAGACGGCATCGAACACGGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGC 42743 |||| || || ||||| ||| ||||||||||||||||||||| ||||||| ||||| Sbjct 121 CCTGGTACGAGGAGTCGAAGACGAGCTCGCCGCCGATGTTCGGCAGGCCGAGGCTGTTGC 180 Query 42744 CGTAG 42748 ||||| Sbjct 181 CGTAG 185 Score = 161 bits (178), Expect = 3e-35 Identities = 109/122 (89%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42809 CCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGG 42868 |||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 260 CCGAAGCGGAGCTGGTCCATGACGGCGACGGGGCGCGCGCCCATGGAGATGATGTCGCGC 319 Query 42869 ACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTG 42928 ||||||||||| ||||||||||| ||||||||| ||||||||| |||||| ||||||||| Sbjct 320 ACGATGCCGCCGACACCCGTCGCGGCGCCCTGGTAGGGCTCGACGAACGACGGGTGGTTG 379 Query 42929 TG 42930 || Sbjct 380 TG 381 >seq2953 Length=185 Score = 152 bits (168), Expect = 2e-32 Identities = 147/186 (79%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 11085 CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCACCTTCGACCGTCAGGCGAACGAGT 11144 ||||||| |||||||| | || || |||||||| ||||||||||| ||| ||||||||| Sbjct 185 CGGTGGCCAACTTCACGGTGGCGTCCACGCCGCGGACCTTCGACCGCCAGTCGAACGAGT 126 Query 11145 GGAAGGACGGCGAAGCGCTGTTCCTCCG-TGCGTCCGTGTGGCGCGAGTTCGCGGAGCAC 11203 |||||||||| || | |||||| | || ||| || | ||||||||| ||||||| || Sbjct 125 GGAAGGACGGGGACACCCTGTTCATGCGCTGC-TCGATCTGGCGCGAGGCCGCGGAGAAC 67 Query 11204 GTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCATCCGGACGCCTGAAGCAGCGC 11263 || |||| |||||||| ||||||||||| ||||||| || ||||| |||||| Sbjct 66 GTCGCGGAGTCGCTGACGAAGGGCATGCGCGTCATCGTGCAGGGCCGCCTCGTCCAGCGC 7 Query 11264 TCCTAC 11269 || ||| Sbjct 6 TCGTAC 1 >seq4136 Length=209 Score = 150 bits (166), Expect = 5e-32 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 44472 CACAAGGGCATGCCGATCATCGCGTCCGATGCCCGCCTCGACTTCTTCACCAAGCAGGTG 44531 |||||||||||| |||||||| | |||| | |||||||| | |||||||||| Sbjct 1 CACAAGGGCATGGCGATCATCCCCGCCGACAGCAAGATCGACTTCCTGTCCAAGCAGGTC 60 Query 44532 GGCACCTCCCGCAACATACGCGGAGGCTGGTGGGCCACCTGGCTCATGGGCGGGCTGAAC 44591 |||||| || ||||| ||||| || |||||| | | |||||||||||||| ||| Sbjct 61 CTCACCTCGCGGAACATCCGCGGCGGGTGGTGGATGAACATCCTCATGGGCGGGCTCAAC 120 Query 44592 TACCAGATCGAGCACCACCTCTTCCCCAGCATGCCTCGGATCCATCTGTCCCAGGCAAGG 44651 | |||||||||||||||||| ||||| |||||||| || || || | | ||| | Sbjct 121 TTCCAGATCGAGCACCACCTGTTCCCGAGCATGCCGCGCCCGCACCTCGCGCGGGCCCGC 180 Query 44652 AAGATCGTGCGCGAGCACTGC 44672 |||||||||||||||||||| Sbjct 181 GAGATCGTGCGCGAGCACTGC 201 >seq525 Length=302 Score = 123 bits (136), Expect = 7e-24 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 44409 GCCTTCATGGGCGTCCAGCTCGCCGTCTTCGGCGTGTACATGGGGGCCTCGTTCGCTCCG 44468 || ||| | | ||| |||||||| ||||||||| | | || | | ||||||| ||| Sbjct 44 GCGTTCCTCGCCGTGCAGCTCGCGGTCTTCGGCATCCTGCTCGGCGGCGCGTTCGCACCG 103 Query 44469 AACCACAAGGGCATGCCGATCATCGCGTCCGATGCCCGCCTCGACTTCTTCACCAAGCAG 44528 ||||| ||||||||||||||| || || | ||| | |||||||| | | ||| Sbjct 104 AACCATAAGGGCATGCCGATCGTCCCGGCGACTGCGGACGTCGACTTCCTGCGCCGCCAG 163 Query 44529 GTGGGCACCTCCCGCAACATACGCGGAGG-CTGGTGGGCCACCTGGCTCATGGGCGGGCT 44587 || || ||||||||||| ||||| || | ||| | | | || |||||||||| || Sbjct 164 GTCCTCATGTCCCGCAACATCCGCGGCGGCCCGGTCGTCGA-CTTCTTCATGGGCGGCCT 222 Query 44588 GAACTACCAGATCGAGCACCACCTCTTCCCCAGCATGCCTCG 44629 ||| |||| | ||||||||||| ||||| |||||||| || Sbjct 223 CAACCGCCAGGTGGAGCACCACCTGTTCCCGAGCATGCCCCG 264 >seq3101 Length=193 Score = 118 bits (130), Expect = 3e-22 Identities = 105/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 42355 GCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGAT 42414 |||||| | ||||||||| ||| ||||| |||||||| || || |||||||||||||| Sbjct 2 GCCGTTCGAGGCGAGCTCCGACGTCGCGCACGAGATGCCGGCGGCACCGAGGTCCTGGAT 61 Query 42415 CGCCTCGACCAGCT-CGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGG 42473 |||| || | || || ||| ||| ||||| ||||||||||||||||| |||||||| Sbjct 62 GCCCTCCACGACCTGCGCCGC-GTAGAGCTCGAGGCAGCACTCGATGAGGACCTTCTCCA 120 Query 42474 CGAAGGGGT 42482 |||||||| Sbjct 121 TGAAGGGGT 129 >seq3645 Length=349 Score = 91.5 bits (100), Expect = 4e-14 Identities = 93/118 (79%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 |||||||| || ||||| |||||||| | ||||||||||| | |||||| ||||||||| Sbjct 116 ATGGCAGGTGACACCGTCATCACGGTGATCGGGAACCTCACGGGAGACCCGGAGCTGCGT 57 Query 11066 TACACGCAGAACGGGCTGC--CGGTGGCGAACTTCACCATCGCATCGACGCCGCGCAC 11121 | ||| | |||| ||| ||||||| |||||||| | || || |||||||| || Sbjct 56 TTCAC-CCCCTCGGG-TGCGGCGGTGGCCAACTTCACGGTGGCGTCCACGCCGCGGAC 1 >seq231 Length=600 Score = 87.8 bits (96), Expect = 5e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43905 GGCTTCCTCCTGTTGGGCGACAGCTGGTTCCAGCTCCTTATCGCCGCCGCTCTCGGCATC 43964 || ||| |||| |||||||| |||||||||||||| |||||| || |||||| | Sbjct 450 GGGTTCGTCCTCCTGGGCGACTCGTGGTTCCAGCTCCTCGTCGCCGGGGCGCTCGGCCTG 509 Query 43965 CTGTTCACCCAGGTGGCTTTCCTCGCGCACGAGGCGGCACACCGGCAG 44012 | |||||||| | || ||| |||||||||||||| | ||||| ||| Sbjct 510 ATCCTCACCCAGTTCGCGTTCGTCGCGCACGAGGCGTCGCACCGCCAG 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148238111914392