Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq1228 235 3e-57 seq2953 87.8 9e-13 >seq1228 Length=733 Score = 235 bits (260), Expect = 3e-57 Identities = 404/596 (68%), Gaps = 44/596 (7%) Strand=Plus/Minus Query 66147 CAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAG 66206 ||||| ||||| || |||||||| || |||||| ||| | || || || |||| | Sbjct 731 CAGCCGGACACGGGGGAGCAGGCGCTCGAGATCACGGACATGCTGATCCGCTCGGGCGCG 672 Query 66207 GTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGG 66266 | ||||||||| | ||||| || |||||||| ||||| ||||||| |||| || Sbjct 671 CTCGACATCATCGTCATCGACTCCGTCGCGGCCCTCGTGCCCAAGGCGGAGATCGAGGGC 612 Query 66267 GACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAG 66326 || || || ||| |||||||| || || |||||||| ||||| ||||| |||||||| Sbjct 611 GAGATGGGCGACAGCCACGTCGGTCTCCAGGCCCGCCTCATGTCGCAGGCGCTGCGCAAG 552 Query 66327 CTGACCGGCACGATTGCCAGCAC---CAACACGCTCACCCTGTGGGTGAATCAGCTGCGC 66383 | ||||| || | |||| | | |||| | || | | | || ||||| ||| Sbjct 551 ATCACCGGTGCGCT---CAGCGCGTCCGGCACGACCGCCATCTTCATCAACCAGCTCCGC 495 Query 66384 GAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTG 66443 |||||||||||| ||| || |||| | ||||| || |||||||| ||||| ||| Sbjct 494 GAGAAGATCGGC---GTGTTCTTCGGCTCTCCCGAGACGACGACCGGTGGCAAGGCGCTG 438 Query 66444 CGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGC--- 66500 |||||||||||||| ||| | || ||||| | |||| ||| ||||| ||| Sbjct 437 AAGTTCTACGCCTCGGTCCGTCTCGACATCCGCCGCATCGAGACCCTCAAGGAGGGCANN 378 Query 66501 --------------------------------GATGAGGCTGTCGGCAACCGCACGCGCG 66528 | || ||||||||||| || |||| Sbjct 377 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCGGTCGGCAACCGGACCCGCG 318 Query 66529 TGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCT 66588 ||||||| |||||||||||| ||||||| ||| | ||||| ||||| |||| ||| Sbjct 317 TGAAGGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCT 258 Query 66589 ACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCA 66648 |||| | ||||| |||||||||| || ||| ||||||||| ||| | ||| || Sbjct 257 ACGGGGTCGGCATCTCCCGCGAGGGTGGCCTCATCGACATGGGCGTGGAGCACGGGTTCG 198 Query 66649 TCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAG 66704 | ||||| ||| | ||||||| ||||| | | | | |||| ||||||||| Sbjct 197 TGCGCAAGTCCGGGTCGTGGTTCACCTACGGCGGCGACCAGCTCGGGCAGGGCAAG 142 >seq2953 Length=185 Score = 87.8 bits (96), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 13/184 (7%) Strand=Plus/Minus Query 59357 GTCGCCAACTTCACCGTCGTGTCCAACGAACGCCGCCG-----CGACGCCCAGGGCAAC- 59410 || ||||||||||| || | ||||| |||||| | |||| |||| ||| Sbjct 183 GTGGCCAACTTCACGGTGGCGTCCA-----CGCCGCGGACCTTCGACCGCCAGTCGAACG 129 Query 59411 --TGGGTCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGA 59468 ||| ||||| ||| || ||| | |||||| | ||||||||||| ||||| |||| Sbjct 128 AGTGGAAGGACGGGGACACCCTGTTCATGCGCTGCTCGATCTGGCGCGAGGCCGCGGAGA 69 Query 59469 ACGTAGCGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGC 59528 |||| ||||| || ||| ||| ||||||||||||||| ||| |||| |||| Sbjct 68 ACGTCGCGGAGTCGCTGACGAAGGGCATGCGCGTCATCGTGCAGGGCCGCCTCGTCCAGC 9 Query 59529 GCTC 59532 |||| Sbjct 8 GCTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242456487351536