Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq2584 441 2e-119 seq752 188 2e-43 seq710 125 2e-24 seq1079 91.5 5e-14 seq362 86.0 2e-12 seq4528 80.6 9e-11 >seq2584 Length=593 Score = 441 bits (488), Expect = 2e-119 Identities = 439/569 (77%), Gaps = 0/569 (0%) Strand=Plus/Minus Query 39204 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGG 39263 ||||||||||| | || | ||| ||||||||||||||| || || ||||||||||||| Sbjct 593 CGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGCCGCAGCAGGTCGG 534 Query 39264 CCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGA 39323 |||| || || ||| || |||||||||||||| ||| |||| |||||||||||||||| Sbjct 533 CCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGCCCTCTGGACCTGCTCCTGGTAGA 474 Query 39324 TGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAA 39383 |||||| ||||| ||| ||| ||||||||| ||||||| ||| | ||| ||||| | Sbjct 473 CGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGA 414 Query 39384 TCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGC 39443 | ||| |||| |||| | || ||||| || || || ||||||||||| ||| | || Sbjct 413 TGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGC 354 Query 39444 CCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCT 39503 ||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| ||||| |||| Sbjct 353 CCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCT 294 Query 39504 TCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGT 39563 ||| | |||| || || | |||||| | |||||||||||||||||||| |||||||| Sbjct 293 TCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGT 234 Query 39564 CACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGA 39623 |||| || ||||||||||| | || |||||| |||| || ||| | |||| Sbjct 233 CACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGA 174 Query 39624 CGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCC 39683 ||||| | ||| ||||||||||| |||||| | | |||||||||||||| Sbjct 173 TCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCC 114 Query 39684 GCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACT 39743 |||| ||||||||||||||||||| ||| | || |||| || |||||||| ||| Sbjct 113 GCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACT 54 Query 39744 GCGTGACGGTGACGCCGTCCGCAGGACGG 39772 | |||| | |||||||| ||||||| Sbjct 53 GGGTGATGACCGCGCCGTCCTGAGGACGG 25 >seq752 Length=287 Score = 188 bits (208), Expect = 2e-43 Identities = 197/256 (77%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 38929 CACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCAT 38988 |||||| ||||| || || | | ||||||||| |||| |||||| ||||| Sbjct 260 CACGTCCGGCGGGAGCACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAG 201 Query 38989 CTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGT 39047 ||||| ||||||||||| ||| | || || | |||||||||||||| | |||||||| Sbjct 200 CTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGT 142 Query 39048 GCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGT 39107 || ||| ||| ||||||| | ||| || | ||| |||||| | || ||||||||||||| Sbjct 141 TCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGT 82 Query 39108 TGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCG 39167 |||||||||| || ||||| || || ||| |||||| ||||||||||| ||| ||| | Sbjct 81 TGAAGGCGTAGCCCGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGG 22 Query 39168 AGTAGCCTCGCTCGCG 39183 |||| || ||||| || Sbjct 21 AGTACCCGCGCTCCCG 6 >seq710 Length=223 Score = 125 bits (138), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40289 GAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCG 40348 || || || |||||||| || || || ||||| | | ||| | |||||||||||| | Sbjct 8 GAGCCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTG 67 Query 40349 ATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATC 40408 |||||||||||||| || |||||||| ||||||||||||||||||||| | ||| || Sbjct 68 ATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTC 127 Query 40409 TCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCGGTCCCGTTCGGGAACCGTC-GAGCTGC 40467 |||||||| |||||||| | ||| | | ||||| ||| |||| | | || | Sbjct 128 TCGTACTGCGCCTGCTTGCGCGCCGCGTCCGGGATGCCGTTGGGGTACCGGCGGTGCAG- 186 Query 40468 CCCACGGTGGACCTCGTCCTCGAACCAGGTC 40498 ||| || | ||||| | |||||||| || Sbjct 187 CCCGCGCTCCACCTCCTTGACGAACCAGCTC 217 >seq1079 Length=254 Score = 91.5 bits (100), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 41090 AGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGA 41149 ||||||||||| || |||| || ||||| | ||| | ||| |||||||||||||| Sbjct 214 AGGTTGTGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGC 155 Query 41150 CCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCA-CTGCACCCGCTCCTGATCGAA 41208 | ||||||| || ||| ||| | ||||| | | |||| || ||| ||||| Sbjct 154 GCCGAGACGTCGTCGGACTCCTGCCCCT-GCTGCCCGAACCGCACGCGGGTCTGGTCGAA 96 Query 41209 GCG---CGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGA 41255 || || |||||| | | ||||||||||| ||||||||||||||||| Sbjct 95 CCGGCTCGTGCCCGGCGTGACGTACGCCTCGACGCCGATGATCGGCTTGA 46 >seq362 Length=717 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38497 CTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38556 ||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 207 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 148 Query 38557 GAGAAGCGGACCCTTCGCCCAGTCC 38581 ||| || | ||| |||||||| Sbjct 147 GAGGCGCTGCTTCTTGTCCCAGTCC 123 >seq4528 Length=228 Score = 80.6 bits (88), Expect = 9e-11 Identities = 108/148 (73%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC-CGGTCATCGAAGTCGA 40181 |||| || ||||| ||||| | |||||||||| |||| ||| | | | |||| ||||| Sbjct 82 CCCGAACGTCTCGTAGACGTGCTGGATGACCTCCTCGCGCCGCGCCGAC-TCGATGTCGA 140 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 |||| | ||| ||| | ||||||||||| ||||| |||||||| | || |||| Sbjct 141 TGTCGATGTCCGGCGGGCCGTCGCGCTCGGGGGCGAGGAAGCGCTCGAACAGCAGGCCGT 200 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCC 40269 ||| || | |||| | | ||||| || Sbjct 201 GCTTCACCGCGTCGACGGCCGTGATGCC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160397432079192