Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq2584 517 4e-142 seq752 197 4e-46 seq710 116 1e-21 seq1079 113 1e-20 >seq2584 Length=593 Score = 517 bits (572), Expect = 4e-142 Identities = 467/585 (80%), Gaps = 2/585 (0%) Strand=Plus/Minus Query 38544 CGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGG 38603 ||||||||||| | || | ||| ||||||||||||||| ||||| || || ||||||| Sbjct 593 CGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGCCGCAGCAGGTCGG 534 Query 38604 CCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGA 38663 |||| ||||| | ||||||||| ||||||||||| ||| |||| |||||||||||||||| Sbjct 533 CCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGCCCTCTGGACCTGCTCCTGGTAGA 474 Query 38664 TGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGA 38723 |||||| ||| ||||| ||| |||||||| || || |||| ||| | ||| ||||||| Sbjct 473 CGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGA 414 Query 38724 TCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGC 38783 | ||| ||||| |||| ||||||||||||| || |||||||||||||||||| ||||| Sbjct 413 TGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGC 354 Query 38784 CCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGCT 38843 ||||||| ||||| ||||||||||| | |||||| |||| ||| ||||||| |||||||| Sbjct 353 CCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCT 294 Query 38844 TCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGT 38903 ||| | |||| || || | |||||| | ||||||||||||||||||||| |||||||| Sbjct 293 TCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGT 234 Query 38904 CGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGA 38963 | || | || ||||||||||||| ||| ||| || |||| || |||||| |||| Sbjct 233 CACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGA 174 Query 38964 CGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCC 39023 |||| | ||| ||||||||||| ||||||| | | |||||||||||||| Sbjct 173 TCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCC 114 Query 39024 GGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACT 39083 | |||||||||||||||||||| | ||||| || ||||| | ||||||||||||||| Sbjct 113 GCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACT 54 Query 39084 GCGTGATCGTTACGCCGTCCGCAGGCCGCACCCACG-TCGGGATG 39127 | ||||| |||||||| ||| || | || | |||||||| Sbjct 53 GGGTGATGACCGCGCCGTCCTGAGGACG-GCGCATGATCGGGATG 10 >seq752 Length=287 Score = 197 bits (218), Expect = 4e-46 Identities = 197/253 (78%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 38269 CACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCAT 38328 |||||| ||||| || || | | |||||||| ||||||| |||||| ||||| Sbjct 260 CACGTCCGGCGGGAGCACGGTGATGTGCATGCGCCGGCACTCGTTGAGGTAGAGGGCCAG 201 Query 38329 CTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAGT 38387 ||||| ||||||||||| ||| | || || | |||||||||||||| | |||||||| Sbjct 200 CTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAGT 142 Query 38388 GCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGT 38447 || ||| ||| ||||||| | ||| || | ||| |||||| | || ||||||||||||| Sbjct 141 TCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTGT 82 Query 38448 TGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCG 38507 |||||||||| || ||||| || || ||| |||||| |||||| |||| || ||||| | Sbjct 81 TGAAGGCGTAGCCCGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCGG 22 Query 38508 AGTAGCCTCGCTC 38520 |||| || ||||| Sbjct 21 AGTACCCGCGCTC 9 >seq710 Length=223 Score = 116 bits (128), Expect = 1e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39622 GGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGC 39681 ||||| ||||| || || |||||||| || |||||||| | | || | ||||| || Sbjct 1 GGCCATGGAGCCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGC 60 Query 39682 CCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCAT 39741 |||| ||||||||||||||| |||||||||||| |||||| ||||||||| |||| | Sbjct 61 CCAGTTGATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGAC 120 Query 39742 GTCGATCTCGTA 39753 ||| ||||||| Sbjct 121 CTCGGTCTCGTA 132 >seq1079 Length=254 Score = 113 bits (124), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 40426 GAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACC 40485 ||||||||||||||| || |||| | ||||||||| |||||||| ||||| ||||| Sbjct 218 GAACAGGTTGTGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACC 159 Query 40486 CCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCA-CTGGACCCGCTCCTGGT 40544 || | ||||||| || |||| | || ||||| | | | || || ||||| Sbjct 158 GCGCGCCGAGACGTCGTCGGACTCCTGCCCCTGC-TGCCCGAACCGCACGCGGGTCTGGT 100 Query 40545 CGGAGCG---CGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAG 40601 || | || || |||||||| |||||||||||||| |||||||| ||||||| || Sbjct 99 CGAACCGGCTCGTGCCCGGCGTGACGTACGCCTCGACGCCGATGATCGGCTTGATGCCCT 40 Query 40602 CGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCG 40636 |||||| || ||| |||| ||| |||| ||| Sbjct 39 TCGCCTGCGCCCGCGACCAGAACTCGAACGCCCCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160231041382200