Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177915.1_202017-04- 25] 4,708 sequences; 12,504,838 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq2584 441 2e-119 seq752 192 2e-44 seq710 120 1e-22 seq1079 100 9e-17 seq362 82.4 2e-11 >seq2584 Length=593 Score = 441 bits (488), Expect = 2e-119 Identities = 439/569 (77%), Gaps = 0/569 (0%) Strand=Plus/Minus Query 39196 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGG 39255 ||||||||||| | || | ||| ||||||||||||||| || || || || ||||||| Sbjct 593 CGAACTCCTTGTCGAGGATCTCCTTCTTCTTCTTGCCCATCGCGCGCCGCAGCAGGTCGG 534 Query 39256 CCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGA 39315 |||| || || |||||| ||||||||||| || ||| |||| |||||||||||||||| Sbjct 533 CCTGTCCGAGCGAGTACCCGGCGAGGATCTGCGCGGCCCTCTGGACCTGCTCCTGGTAGA 474 Query 39316 TGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGA 39375 || || ||||||||| | |||||||| || || |||| ||| | ||| ||||||| Sbjct 473 CGATGAGGCCGTAGGTCTCGTCGAGGATCTCCGCGAGGGGCTGCTCGAGCTCCGGGTGGA 414 Query 39376 TCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGC 39435 | ||| |||| |||| ||||||||||||| || |||||||||||||||||| || || Sbjct 413 TGGGCTCGATCTTCTGCAGCCCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCATGC 354 Query 39436 CCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCT 39495 ||||||| ||||| ||||||||||||| |||||| || ||| ||||| |||||||||| Sbjct 353 CCATCGGGCCCGGGCGGTACAGCGCGATGACGGCCGAGAGGTCGTCGAACTTGTCCGGCT 294 Query 39496 TCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGT 39555 ||| | |||| || || | |||||| | |||||||||||||||||| || |||||||| Sbjct 293 TCATCTGGCGCAGGAGCGCGCGCATGGGGCCGCCGTCGAGCTGGAACACGCCGAGCGTGT 234 Query 39556 CGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGA 39615 | || | || ||||||||||| | || |||||| |||| || ||| | |||| Sbjct 233 CACCGCGCGCGAGCAGCTCGTACGACGCCTTGTCGTCGAGCGTGAGCGACTCGATCTCGA 174 Query 39616 CGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCC 39675 ||||| | ||| ||||||||||| ||||||| | | |||||||||||||| Sbjct 173 TCGGCTCCTTGCCGTTCATCTCGATGTTCTCGAGCGCGTCGTCGAGGATCGTGAGGTTCC 114 Query 39676 GGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACT 39735 | |||||||||||||||||||| | ||| |||| |||| || |||||||| ||| Sbjct 113 GCAGCCCGAGGAAGTCCATCTTGATGAGGCCGAGGCCCTCGGACGTCGGGTAGTCGAACT 54 Query 39736 GCGTCACGGTCACGCCGTCCGCAGGGCGG 39764 | || | | | |||||||| ||| ||| Sbjct 53 GGGTGATGACCGCGCCGTCCTGAGGACGG 25 >seq752 Length=287 Score = 192 bits (212), Expect = 2e-44 Identities = 200/257 (78%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 38921 CACGTCGGGCGGCAGGACG-TGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCA 38979 |||||| ||||| || ||| ||| || | || ||||| |||| |||||| ||||| Sbjct 260 CACGTCCGGCGGGAGCACGGTGATGTGC-ATGCGCCGGCACTCGTTGAGGTAGAGGGCCA 202 Query 38980 TCTTGTTCTTGTCGTCGCCCACCGAGGTG-AGCACGGCCGCCATGTACTCGGCCGGGTAG 39038 ||||| ||||||||||| ||| | || || | |||||||||||||| | ||||||| Sbjct 201 GCTTGTCCTTGTCGTCGCGCAC-GCTCTGCAGGAGCGCCGCCATGTACTCCGTCGGGTAG 143 Query 39039 TGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTG 39098 | || ||| ||| ||||||| | ||| || | ||| |||||| | || |||||||||||| Sbjct 142 TTCGCCTTGAGGAACGCCGTCCAGTACGCCACGAGGCCGTACCCGGCGGAGTGCGCCTTG 83 Query 39099 TTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCC 39158 ||||||||||| || ||||| || || ||| |||||| ||||||||||| || |||| Sbjct 82 TTGAAGGCGTAGCCCGCGAACGGGACCAGCGTGTCCCAGACCGCCTGGATCGCGGCGTCG 23 Query 39159 GAGTAGCCTCGCTCGCG 39175 ||||| || ||||| || Sbjct 22 GAGTACCCGCGCTCCCG 6 >seq710 Length=223 Score = 120 bits (132), Expect = 1e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40281 GAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCG 40340 || || || ||||||||||| || || ||||| | | ||| | |||||||||||| | Sbjct 8 GAGCCCGCGGCCGAGCCACGGCCCGGGCCGACGCGGATGCCCTGGTCCTTGGCCCAGTTG 67 Query 40341 ATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATC 40400 |||||||||||||| || |||||||| |||||| |||| ||||||||| | ||| || Sbjct 68 ATGAAGTCGGCGACCACGAGGAAGTACCCCGGGAAGCCCATCTGGATGATGACCTCGGTC 127 Query 40401 TCGTACTGAAGCTGCTTGC 40419 |||||||| |||||||| Sbjct 128 TCGTACTGCGCCTGCTTGC 146 >seq1079 Length=254 Score = 100 bits (110), Expect = 9e-17 Identities = 126/170 (74%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 41082 AGGTTGTGCAGGCCGGTCTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACGCACCGCGA 41141 ||||||||||| || |||| || |||||| | ||| | |||||||||||||||||| Sbjct 214 AGGTTGTGCAGACCCTCGTTGTCCTTCGCGAGCAGCGTCATGTGCGTGTACGCACCGCGC 155 Query 41142 CCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCC-CACTTGACGCGCTCCTGGTCGAA 41200 | ||||||| || ||| ||| | ||||| || ||||| ||||||||| Sbjct 154 GCCGAGACGTCGTCGGACTCCTGCCCCT-GCTGCCCGAACCGCACGCGGGTCTGGTCGAA 96 Query 41201 ---GCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGA 41247 || || |||||| | | ||||||||||| ||||||||||||||||| Sbjct 95 CCGGCTCGTGCCCGGCGTGACGTACGCCTCGACGCCGATGATCGGCTTGA 46 >seq362 Length=717 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 38489 CTCCAGCCCGGCAAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGCTCGATGGA 38548 ||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| | Sbjct 207 CTCGAGCCCGGACAGCGGGTGGTCGGAGACGTACAGGCCGAGCATCTCGCGCTCGAACGC 148 Query 38549 GAGAAGCGGACCCTTCGCCCAGTCC 38573 ||| || | ||| |||||||| Sbjct 147 GAGGCGCTGCTTCTTGTCCCAGTCC 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160131846928224