Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177925.1_202017-04- 25] 4,783 sequences; 12,046,303 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq766 138 1e-27 seq1417 134 1e-26 seq1812 93.3 4e-14 seq1079 89.7 4e-13 seq4169 84.2 2e-11 >seq766 Length=14185 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| | || || | ||||| || || ||| Sbjct 6946 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 6887 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| ||||| ||||| ||||||||||||| Sbjct 6886 GACACTATTGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 6829 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || || ||||| ||||||| | | ||| || ||| |||| Sbjct 6828 AACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACA 6769 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || ||||| || || | || | ||||| || Sbjct 6768 ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 6720 >seq1417 Length=24514 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||| ||| | ||||| || || || Sbjct 12576 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 12517 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | |||| ||| ||||| ||||| || || || || || Sbjct 12516 GATACCATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATCCCTCCAGATCA 12458 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || ||||||| | | || || |||||||| Sbjct 12457 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGCAGAACGCTGTCTGATTACAA 12398 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| ||||| | ||||||||||||||||| || Sbjct 12397 CATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 12350 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||||||| ||||||| | || || || || || Sbjct 12348 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 12289 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| |||||| ||||| ||||| || || || || || Sbjct 12288 GACACGATCGA-TAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 12230 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || |||||||| || || ||||||| | | | || || || ||||| Sbjct 12229 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 12170 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || || || ||| | || | ||||| || Sbjct 12169 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 12122 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| ||||| | || || | || || || || ||| Sbjct 11545 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 11486 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | |||| ||| ||||| ||||| ||||| || ||||| Sbjct 11485 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 11427 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || |||||||| |||||| ||||||||| | | || || || ||||| Sbjct 11426 GCAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 11367 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| || ||||| || || Sbjct 11366 TATTCAAAAGGAGTCCACTCTTCA 11343 >seq1812 Length=139 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 25016 GACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACT 25075 ||||||||| ||||| ||||||| | ||||| || || ||||||||||| || || | Sbjct 1 GACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGA--CAAT 58 Query 25076 G--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTT 25132 | ||| |||| | ||| ||||| ||||| || |||||||||||||| | | || || Sbjct 59 GTCAAGTCAAAGATTCA-AGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTT 117 Query 25133 TGCCGGCAAACAATTAGAAGA 25153 ||| || || ||||| ||||| Sbjct 118 TGCTGGTAAGCAATTGGAAGA 138 >seq1079 Length=139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 25016 GACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACT 25075 ||||||||| ||||| ||||||| | ||||| || || ||||||||||| || || | Sbjct 1 GACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGA--CAAT 58 Query 25076 G--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 | ||| || ||| ||||| ||||| || |||||||||||||| | | || ||| Sbjct 59 GTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 118 Query 25134 GCCGGCAAACAATTAGAAGA 25153 || || || ||||| ||||| Sbjct 119 GCTGGTAAGCAATTGGAAGA 138 >seq4169 Length=285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| || |||||||||||||| | | || ||||| || || ||||| ||| Sbjct 4 GACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAA 63 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | | || || || ||||| ||||||||||||||||| | || ||||| | Sbjct 64 GACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAATCCACTTTGCACTTAGTCTTG 123 Query 25212 AGGCTAAGAGGAGG 25225 || | ||||| || Sbjct 124 AGATTGAGAGGTGG 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302740092145