Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177935.1_202017-04- 25] 2,167 sequences; 11,642,650 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1868 116 6e-21 seq362 113 7e-20 seq327 107 3e-18 seq1051 89.7 8e-13 >seq1868 Length=22670 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||| || | ||||||||| || || || || || || Sbjct 10373 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 10314 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||| ||| || ||||||||||||||||| || ||||||||||| Sbjct 10313 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 10254 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || ||| ||| || Sbjct 10253 ATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 10194 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || ||||||| ||||| | ||| |||||||| Sbjct 10193 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 10147 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||| || ||||| ||||| || |||||||| || Sbjct 10145 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 10086 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | || || | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 10085 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 10026 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 10025 ATACCTTCCTTGTCTTG 10009 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || | || || || | || | ||| || || ||| || ||||| || || || Sbjct 10601 CCACCCCTCAACCTCAAGACGAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCCGA 10543 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| |||| |||||| || ||||| |||||||||||||| || ||||| Sbjct 10542 CAGCGTTCTACCATCTTCTAGTTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGAGG 10483 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| || ||||| ||| || ||| ||| || Sbjct 10482 AATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAAC 10423 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || |||||||| | ||| || | ||| |||||||| Sbjct 10422 CTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCAT 10375 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/237 (67%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || |||| || | |||||| || || || || || || ||||| || Sbjct 9689 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 9630 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| || |||| || || || ||||| ||||||||||| ||||| ||||| Sbjct 9629 AGCGTTCTGCCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 9570 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||||| ||| ||| ||| Sbjct 9569 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 9510 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATTAG 146285 || | ||| || |||||||| || || || || | ||| || ||||| | |||||| Sbjct 9509 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 9453 >seq362 Length=22573 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| |||| ||||||||| || || || || || || Sbjct 13875 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 13934 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || |||||||| ||||||||||| || || || ||| Sbjct 13935 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 13994 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||| ||| Sbjct 13995 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 14054 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || || || ||||| ||||| || || | ||| |||||||| || Sbjct 14055 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 14104 >seq327 Length=20421 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||||||||| ||||| || || || || || || Sbjct 14668 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 14609 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 14608 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 14549 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 14548 ATACCTTCCTTGTCTTG 14532 >seq1051 Length=28834 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || || || ||||| |||||||| || || || || || Sbjct 11052 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 11111 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || ||||| || |||||||| ||||||||||| || || || || Sbjct 11112 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 11171 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 11172 ATACCTTCCTTGTCTTG 11188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743506259728640