Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177935.1_202017-04-
25] 2,167 sequences; 11,642,650 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq1233 129 7e-25
seq815 114 2e-20
seq603 102 1e-16
>seq1233
Length=10859
Score = 129 bits (142), Expect = 7e-25
Identities = 386/588 (66%), Gaps = 26/588 (4%)
Strand=Plus/Minus
Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457
|| |||||||| |||| || ||||| | ||| ||| ||| || ||||||||| ||
Sbjct 5137 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGA 5078
Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517
|| ||||| | || ||||| | | ||| ||||| | || | ||| |
Sbjct 5077 GCGTTTGCAAGTCGAATCTTTCCTCCTTCAGTTATAGAAAAACTGGGTATTTCTCATGTT 5018
Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577
||||| | |||| | || ||||| ||| ||||| || ||||| || || |||
Sbjct 5017 AAAGGTTTGCTATTGTACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATT 4958
Query 164578 GCT-CAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633
| | ||| | | ||| | || || ||||| || |||||||| ||| | ||||
Sbjct 4957 GGTACAA--TGCTGAATGCCAAAGAGCCC--AAAATCGTCAATGGTCCAGAAATTTTGAG 4902
Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693
|| || || ||| ||||||| || || | || || ||| |||| || |||| |||
Sbjct 4901 TAAGTACGTTGGTTCTTCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGA 4842
Query 164694 ACAAAAGAAAGC--AGGTTTAGCTAG-TAAATTACATGTTATTGTTTTTGATGAGATAGA 164750
| | | | || ||| | || | | |||||| ||||| |||| |||||| | ||
Sbjct 4841 ATATAGG---GCCAAGGGTGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTGGA 4785
Query 164751 TGCTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATG----CAGTG--GT 164798
| || ||| ||| | | ||| | | || || | || | || || ||
Sbjct 4784 TTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGT 4725
Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858
|||||| ||| | ||||||| |||||||| || || ||||||||||| || | ||
Sbjct 4724 TAATCAATTGTTAGCTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGG 4665
Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918
||||||||| || |||||||| || |||| | || || || ||| |||| ||| |
Sbjct 4664 TATGACCAATCGTAAAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGT 4605
Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966
|| | ||||| |||||||| || ||||| | || ||||||||
Sbjct 4604 CCAAGTTGAAATTCATTTACCCGATGAAAAAGGAAGACTCCAAATTTT 4557
>seq815
Length=30047
Score = 114 bits (126), Expect = 2e-20
Identities = 123/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400
||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| |
Sbjct 16742 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 16801
Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460
| || |||||| | |||||| |||||||||||| ||||| ||| ||||| || |
Sbjct 16802 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAGGGTATTGTTC 16861
Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
| ||| | ||||||||||| |||||| ||||| ||| |||||
Sbjct 16862 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 16904
>seq603
Length=14699
Score = 102 bits (112), Expect = 1e-16
Identities = 367/570 (64%), Gaps = 43/570 (8%)
Strand=Plus/Minus
Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TATC 6758
|||||||||||||||||| | |||||| ||| || || |||||| | ||| | |
Sbjct 12588 GGATGAGGATTATAATCTTCAATTTCAAAGTCTGTCAACTTGAAATCA--TCAATGTCTT 12531
Query 6759 AGACtttttttttAATATTACAACAGGTGAA-GGTTTT--ATTGATCGAGTTAATTGTTC 6815
||| | ||||||| || | ||| ||| || ||| || || | ||||||
Sbjct 12530 TGACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATT--TCTGGTGATTTGTTC 12473
Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875
||| | || | || || ||| ||||| ||| ||||| || | |||||||| || ||
Sbjct 12472 TTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTC 12413
Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935
|||||| | ||| || ||| ||| |||||| | || || || ||||| || || |
Sbjct 12412 ACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAAT 12353
Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG-ATAAAA 6994
||||| ||||| || || |||||||| || | ||| || || ||| || |||
Sbjct 12352 GTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGCATGAAA 12297
Query 6995 ---------TA--------TTGTC----TATAG---------CATAAAATTGACACAATA 7024
|| || || | | | |||| || || | || |
Sbjct 12296 GGCGGGGCTTACCCGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAA 12237
Query 7025 CATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAA 7084
||| ||||| || ||| | | || | ||||| ||| ||||| ||| |||| | |
Sbjct 12236 TATGGCATGGCGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGA 12177
Query 7085 TACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATAC 7144
| | |||||| | |||||||| |||| ||| |||| || |||||||| ||||
Sbjct 12176 TTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATAC 12117
Query 7145 CCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAA 7204
| || || ||| | || || | | || ||||| |||||||| ||||||||||
Sbjct 12116 CTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCCATTGAA 12057
Query 7205 ACCCATAAATAGGACCTAAATCACCTTCTT 7234
| || |||| || || | ||| ||| |||
Sbjct 12056 ATCCGTAAACGGGCCCCAGATCTCCTACTT 12027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595855859317200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |