Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177935.1_202017-04- 25] 2,167 sequences; 11,642,650 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1233 129 7e-25 seq815 114 2e-20 seq603 102 1e-16 >seq1233 Length=10859 Score = 129 bits (142), Expect = 7e-25 Identities = 386/588 (66%), Gaps = 26/588 (4%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||| ||| || ||||||||| || Sbjct 5137 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGA 5078 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| | || ||||| | | ||| ||||| | || | ||| | Sbjct 5077 GCGTTTGCAAGTCGAATCTTTCCTCCTTCAGTTATAGAAAAACTGGGTATTTCTCATGTT 5018 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| | |||| | || ||||| ||| ||||| || ||||| || || ||| Sbjct 5017 AAAGGTTTGCTATTGTACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATT 4958 Query 164578 GCT-CAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | | ||| | | ||| | || || ||||| || |||||||| ||| | |||| Sbjct 4957 GGTACAA--TGCTGAATGCCAAAGAGCCC--AAAATCGTCAATGGTCCAGAAATTTTGAG 4902 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 || || || ||| ||||||| || || | || || ||| |||| || |||| ||| Sbjct 4901 TAAGTACGTTGGTTCTTCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGA 4842 Query 164694 ACAAAAGAAAGC--AGGTTTAGCTAG-TAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 | | | | || ||| | || | | |||||| ||||| |||| |||||| | || Sbjct 4841 ATATAGG---GCCAAGGGTGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTGGA 4785 Query 164751 TGCTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATG----CAGTG--GT 164798 | || ||| ||| | | ||| | | || || | || | || || || Sbjct 4784 TTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGT 4725 Query 164799 TAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGG 164858 |||||| ||| | ||||||| |||||||| || || ||||||||||| || | || Sbjct 4724 TAATCAATTGTTAGCTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGG 4665 Query 164859 TATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATT 164918 ||||||||| || |||||||| || |||| | || || || ||| |||| ||| | Sbjct 4664 TATGACCAATCGTAAAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGT 4605 Query 164919 GAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 || | ||||| |||||||| || ||||| | || |||||||| Sbjct 4604 CCAAGTTGAAATTCATTTACCCGATGAAAAAGGAAGACTCCAAATTTT 4557 >seq815 Length=30047 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400 ||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| | Sbjct 16742 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 16801 Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460 | || |||||| | |||||| |||||||||||| ||||| ||| ||||| || | Sbjct 16802 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAGGGTATTGTTC 16861 Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| | ||||||||||| |||||| ||||| ||| ||||| Sbjct 16862 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 16904 >seq603 Length=14699 Score = 102 bits (112), Expect = 1e-16 Identities = 367/570 (64%), Gaps = 43/570 (8%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TATC 6758 |||||||||||||||||| | |||||| ||| || || |||||| | ||| | | Sbjct 12588 GGATGAGGATTATAATCTTCAATTTCAAAGTCTGTCAACTTGAAATCA--TCAATGTCTT 12531 Query 6759 AGACtttttttttAATATTACAACAGGTGAA-GGTTTT--ATTGATCGAGTTAATTGTTC 6815 ||| | ||||||| || | ||| ||| || ||| || || | |||||| Sbjct 12530 TGACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATT--TCTGGTGATTTGTTC 12473 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||| | || | || || ||| ||||| ||| ||||| || | |||||||| || || Sbjct 12472 TTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTC 12413 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 |||||| | ||| || ||| ||| |||||| | || || || ||||| || || | Sbjct 12412 ACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAAT 12353 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG-ATAAAA 6994 ||||| ||||| || || |||||||| || | ||| || || ||| || ||| Sbjct 12352 GTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGCATGAAA 12297 Query 6995 ---------TA--------TTGTC----TATAG---------CATAAAATTGACACAATA 7024 || || || | | | |||| || || | || | Sbjct 12296 GGCGGGGCTTACCCGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAA 12237 Query 7025 CATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAA 7084 ||| ||||| || ||| | | || | ||||| ||| ||||| ||| |||| | | Sbjct 12236 TATGGCATGGCGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGA 12177 Query 7085 TACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATAC 7144 | | |||||| | |||||||| |||| ||| |||| || |||||||| |||| Sbjct 12176 TTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATAC 12117 Query 7145 CCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAA 7204 | || || ||| | || || | | || ||||| |||||||| |||||||||| Sbjct 12116 CTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCCATTGAA 12057 Query 7205 ACCCATAAATAGGACCTAAATCACCTTCTT 7234 | || |||| || || | ||| ||| ||| Sbjct 12056 ATCCGTAAACGGGCCCCAGATCTCCTACTT 12027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595855859317200