Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F900177935.1_202017-04- 25] 2,167 sequences; 11,642,650 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1868 140 3e-28 seq362 134 1e-26 seq1051 132 4e-26 seq327 132 4e-26 >seq1868 Length=22670 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| |||| || || || || ||| | || Sbjct 9919 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 9978 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| ||||| || || || |||||| Sbjct 9979 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 10038 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || ||| |||||||| || || | || ||||| ||| Sbjct 10039 CAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 10098 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || |||||||| ||| | ||| | ||||| || Sbjct 10099 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTAT 10148 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| |||| || || || || ||| | ||| Sbjct 10147 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 10206 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||||||||| |||||||| || || || |||||| Sbjct 10207 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 10266 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||| | ||||| || ||| | || || |||||| Sbjct 10267 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 10326 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || |||| ||| | ||| | ||||| || Sbjct 10327 ATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGGTAT 10376 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||| || | || || | ||||| ||| | ||| Sbjct 9463 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 9522 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || |||||| Sbjct 9523 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 9582 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| || || | |||||| | || | || ||||||||| Sbjct 9583 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGCAGAACGCTGTCTGATTACAAC 9642 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||||||||| Sbjct 9643 ATTCAGAAGGAGTCCACCTTACAT 9666 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| |||| || || || || ||| | || Sbjct 10375 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 10434 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||||||||| ||||| || || || || || Sbjct 10435 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 10494 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| |||||| | ||||| || || | || || ||||| Sbjct 10495 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 10554 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | || | || ||| | ||| ||||||| Sbjct 10555 ATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGG 10601 >seq362 Length=22573 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||| ||| ||||||| || ||||| ||| | || Sbjct 14101 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 14042 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 14041 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAA 13982 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||||||||||| || || | ||||| |||||| Sbjct 13981 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 13922 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || |||| ||||| ||| | ||| | ||||| Sbjct 13921 ATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 13875 >seq1051 Length=28834 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 11269 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 11210 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 11209 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 11150 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | || || |||||||||||||| Sbjct 11149 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 11090 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || || ||| | ||| | ||||| || Sbjct 11089 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 11049 >seq327 Length=20421 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 14451 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 14510 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 14511 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 14570 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || || | || || |||||||| |||||| Sbjct 14571 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 14630 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||||| ||| | || | ||||| || Sbjct 14631 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTAT 14671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906619147840